Varroa jacobsoni: 111268926
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Entry
111268926 CDS
T07417
Name
(RefSeq) cytoplasmic FMR1-interacting protein-like isoform X1
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
vja
Varroa jacobsoni
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111268926
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111268926
Factors involved in mRNA localization
Other mRNA localization factors
111268926
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
Motif
Other DBs
NCBI-GeneID:
111268926
NCBI-ProteinID:
XP_022703898
LinkDB
All DBs
Position
Unknown
AA seq
1483 aa
AA seq
DB search
MSSFNPPGRTSPPPPTPPPPLIDVRDLLINALDFLPKFPPTSGNPSRNKDASCSLLPLPS
SNDVSDVETEAILRTDETSLTIKPNRKGPYSGTIGNSSTATEYSSSTAPGVSIEVEDPAY
DAVYDGAGQRAANLVELVSAPADFEDSLGLPSDNVPITPAWGRGSEYDQTDTNDDNSEGP
LSMFLRQDAPTEHLYCELSPRHESRSSVKMAVAEVTLGDALSNVDVLDELPLPDQQPCIE
ALPCSIVYHANFDTNFEDRNAFVTGVAKYIEEATVHSELNEMLEQGEQHAVMLYTWRCCS
RAIPQPKSNEQPNRVEIYQKTVEVLKPEVRKLLNFMYFQRKAIERFTAEVKRLCHTEKRK
DFVSEAYLLTLGKFINMFAVLDELKNMKSSVKNDYATYRRAAQFLKVLADSQQLQESQNL
SMFLATQNKIRDQLKEALEKIPGYEELLADILHTSVHMLETHMYMLPSEKHMLVKVLGFG
SFLIDGNVANINKLDQKKRVSIAKMDRILKNLEMVPLFGDMQISPFHYIKHSAHFDAKNW
PLSSSTNPSPQSDLLKNLQPIRDEYARYISELARHSNEVTTTVKESPRTDDENRELSELA
LSGLQLLSNWTCHVTELYSWKLMHPTDPTLNKQYCPPDAEEYERATRYNYSPDEKFALIE
VIAMIKGLQVLMSRMETVFTDAARRHVYFELQQFVQLNLREPLRKAVKNKKEVVRSIVQS
VRETCADWMRGYEPSEDPALKGKKDAEYEIKAPRRNVGPSSTQLYMVRTMLESLVADKSG
TKRSLRKDLDAASLADIEKFHKQSFYWNYLLNFSQTLQECCDLSQLWYREFYLEMTMGRR
IQFPIEMSLPWILTDHILTTKNPAMMECVLYPLDLYNDSAFYALTKFKKQFLYDEVEAEV
NLCFDQFAYKLSDQIFAYYKHLAGSILLDKRFRAECMIQAGGTSFPYPQANRYETLLKQR
HVQLLGRSIDLNRLIAQRVNDAMLKSLNLAIQRFESSNITGIVELEALLSINRLAHQLLS
KHLQLDSFDAQLREANHNVLAPYGRICLHTFWELNYEFLPNYCYNAATNRFVPVNIRGPM
SFGQKLEREKPPSAQPHCLYGSKSLNVAYTAIFAVYAKFIGPPHLRSLCRLLGYQGIAVV
MEELLKVVKSLIQGTILQYAKTLKNVMPKVCRLPRYDYGSPGILGYYQAQLNDIVQFPDV
KMDMFQSFREVGNALLLCMLVEQLLSQEEVCDLQHAAPFQNILPTPHCKDGEKQETKLKR
QEQKYASLQVVPTIEKLASPKQAAIAKEGDLLTKERLCCGLSVFEVILGRVRSFLDDPIW
TGGPPQNGVMNIDECDEFHRLWSALQFVYCIPVGENEFTVEQLFGEGLNWAGCVMIALLG
QQRRFEALDFCYHILKVQRVDGKDELVKQIPLKKMVDRIRRFQVLNSQIFAILNKFLKNE
ASEGFPPVEHVRCYPPPVHQSQQNRANQPATIYMRSDQLVYNK
NT seq
4452 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatttaatccccctggccgaacttcgcctccacctcctactccgccacccccg
ctaattgatgttagagacctgttaattaacgccctggattttctaccgaaattcccacct
acgtcaggcaatccctctcgtaacaaggatgcgtcttgctctttgcttcccctaccttct
tcaaatgatgtgtcagatgttgaaacagaagctatactaagaactgatgaaacatcttta
actattaagccaaacagaaaaggcccttacagcggaacgataggaaacagtagcaccgcc
accgaatatagttcaagtactgctccgggagtatctatcgaagtggaggaccctgcctac
gatgcagtatatgatggtgctggtcagagagctgccaatctcgtagagctcgttagtgct
cctgcagactttgaagactcgcttggattgccatctgacaacgtcccgataacaccagcc
tggggcaggggcagtgaatatgatcaaacagacacaaacgatgataatagtgaaggacct
ttatcgatgtttcttcgacaagatgctccgactgaacacttatattgcgagctttcgccg
agacatgagtctagatctagcgtcaagatggcggttgcggaggtaacattgggtgatgcg
ttgtccaatgtagatgttttggatgagcttcctcttccggatcagcaaccctgcatcgag
gccctaccatgttcaattgtttatcacgccaacttcgacacaaacttcgaagatcggaac
gcttttgtgaccggcgtcgccaaatatatcgaagaggctaccgtgcattctgaactgaac
gaaatgttagagcaaggagagcagcatgcggtgatgctgtatacctggcgctgttgttcg
agagcgattccacagccgaaaagtaacgagcagccgaacagggtcgaaatctatcaaaag
actgtggaagttctcaaaccagaagtgcgaaaactacttaatttcatgtacttccaacgt
aaggcgattgagcgattcacagccgaggtgaaacggctctgtcatacggaaaaacgtaaa
gactttgtgtcagaagcatacctgcttaccctcggcaaattcatcaacatgttcgctgtt
cttgacgagctcaaaaacatgaaatcttctgtaaagaatgactatgctacctacaggaga
gccgcgcaattccttaaagtgttggcggattcacaacaacttcaggaatcacaaaaccta
tcaatgttcctggccacccagaataagatccgcgaccaactaaaggaggctcttgagaag
atccccggatatgaggagctactggcggacattctgcacacatcggtacacatgttagag
acgcatatgtacatgttaccatcagagaaacacatgctcgtcaaagtccttgggttcggc
tcatttctcattgatggaaacgtggctaatataaacaaactggatcagaagaaacgagtg
tccattgccaaaatggaccgcatattgaagaaccttgaaatggtgccactattcggtgac
atgcagatttcgcctttccactacattaaacactcggctcactttgacgcgaaaaattgg
cctttgtcatcttcgacgaatccatcgccgcaaagtgacctactgaaaaatctgcagccg
atccgcgatgaatatgcgcgttatattagtgagttggctcgccactcaaacgaagtgacc
accacggttaaggagtcacctcgcactgatgatgaaaatcgtgagctctcggagttggct
ttatcgggactgcagctgctgtccaactggacttgtcatgttacggagctatactcgtgg
aaattgatgcaccctacagatcctacccttaacaaacaatactgtcctccagacgctgaa
gagtatgaacgggcaacccgatataactactcacccgatgaaaagttcgctctcatcgag
gtaatcgcaatgattaagggacttcaggtacttatgagccgtatggaaacagtatttacc
gatgctgcgcgccggcatgtttacttcgagcttcaacagttcgtccagttgaatctcagg
gaaccactacggaaagccgtgaaaaataaaaaggaagtagtcagatctattgtgcagtct
gtacgagagacatgcgccgactggatgcgtggttatgagccaagcgaagacccggcgctc
aaggggaaaaaggatgccgaatacgaaattaaggcacctagacgaaacgtaggaccttca
agtactcagttatatatggttcgtacaatgttggaaagtttggtcgcagacaaaagcgga
accaaacgtagtcttcgaaaagacttggacgccgcgtccttggctgatatcgaaaagttc
cataagcaatcattttattggaattatttgcttaatttctcgcagacattgcaggaatgt
tgtgatttgtcccagctgtggtaccgcgagttctatcttgagatgacaatgggtagacgg
atccagtttcccatagaaatgtctcttccgtggatccttacggaccacatattgacgacg
aaaaaccctgccatgatggagtgcgttctatatccgctcgacctgtataatgattcagct
ttctacgcgctgaccaagttcaaaaagcagttcctttacgacgaagtcgaagccgaggtt
aatttgtgcttcgatcaattcgcctataaattgtcggatcaaatcttcgcgtattataaa
cacttagcaggcagtattttgctcgacaagaggttccgtgcggaatgtatgatccaggct
ggtggaacatcgttcccttatccacaggcgaatcgttacgaaactcttctgaagcaacga
cacgtacagctgcttggccgatccatcgacctcaatcgacttatcgcacaacgcgttaat
gatgctatgcttaaaagccttaatcttgccattcaaagattcgaatcatcaaatatcacc
ggcatcgtagaactcgaggcgctgctgtcgataaatcggctggcgcaccaactactttcc
aagcatcttcaactggactcatttgatgcgcagcttcgtgaggctaatcacaacgttttg
gctccgtatggtcggatttgtctacacacgttctgggagctcaattatgaatttcttcct
aattactgctacaatgccgctacaaataggttcgtccctgtgaatatccgtgggccgatg
agtttcggccagaaacttgagcgggaaaagccaccatcagcccaaccacactgtttgtac
ggaagcaaaagtttgaacgtcgcttacacagctatttttgccgtctatgccaagtttatc
gggccaccacaccttcgctctctctgccgccttctcggataccagggaatcgcggtagtc
atggaagaactacttaaggtcgttaaatctctcatccagggcacaattctacagtatgcc
aagacattaaaaaatgtcatgcccaaggtttgtcgtctaccgcgatatgattatggctca
cctggaattcttggttattatcaggctcagctaaacgacattgtacaattccctgatgtc
aaaatggatatgttccagagcttcagagaggtaggcaatgcgctacttttgtgtatgcta
gtcgagcaactgttgtcacaggaagaggtgtgcgatctgcagcatgccgctccattccaa
aacattctgcctacaccgcactgcaaagatggcgaaaagcaagagaccaaactgaaaagg
caggagcagaagtacgccagtttgcaagttgtgccaaccatcgaaaaattggccagtccg
aaacaagcagcgattgccaaagaaggtgatctccttaccaaggagcgactgtgttgtggc
ctcagcgttttcgaagtgatcctaggccgagtacgatcattcctggatgacccgatttgg
accggcgggccgccacagaatggagttatgaatattgatgagtgcgacgagttccacaga
ttgtggtcggctctccagttcgtctattgcatcccggtgggcgaaaacgagtttactgtc
gaacagctctttggagaagggctcaattgggcgggatgtgtaatgattgctcttcttggt
cagcagcgtcgcttcgaggcgctcgacttctgctatcacatactcaaggtacagcgagtc
gatggcaaagacgagttggtgaaacagatcccactcaaaaagatggtggatcgcatacgc
cgctttcaagttttaaattcgcaaatttttgccattttgaataagtttcttaagaatgag
gcctccgagggattcccacctgtagaacatgtccgttgttatccaccaccggtgcatcag
agccaacaaaaccgagccaaccagcctgctacaatatatatgcgctccgatcagctcgtc
tacaataagtag
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