Varroa jacobsoni: 111270183
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Entry
111270183 CDS
T07417
Name
(RefSeq) RNA-binding protein 39-like
KO
K13091
RNA-binding protein 23/39
Organism
vja
Varroa jacobsoni
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vja03041
]
111270183
Spliceosome [BR:
vja03041
]
Common components
Common spliceosomal components
General mRNP proteins
111270183
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_5
RRM_occluded
RRM_7
RBD_DEAH11
DUF7717
Motif
Other DBs
NCBI-GeneID:
111270183
NCBI-ProteinID:
XP_022705981
LinkDB
All DBs
Position
Unknown
AA seq
635 aa
AA seq
DB search
MDVQLDQQAFYNRSSSYSGEDTTYNGKGSSGSANKENSKDQKSSRSRSRSRSIPKDRSDG
RDRDVKDRDRPTRDTEKEYRRRRSRSKDRGDTKKRSRSHSRDNKKRSSDKDAKKGSSKDA
KESKDVKERERSRSRDRKRKSRSRSKDRRRRRSPSKERAARRRSRSKDRRRVERSRSRDR
RRRSASRSKSRGRRRRSHSGGRRKRSISRSPIRGRGLSPFQRRGGEDMSTEERDLRTVFC
MQLSQRIRARDLEEFFSAVGKVRDVRMIVDNKTRKSKGIAYVEFVDLESVPLAMGLNGQK
LFGVPIIVQATQAERNRMANQPGGFTAAAAAAAANGKGPMRLYVGSLHFDITDRMLKEIF
EPFGRVDRVELMREDSGKSKGFAFLTFREADAAKKAMEQLNGFEIAGRPIKVNHVTERGT
GSLNHHHHHHHNQQQAQLDGSLPSVLDNEELDRTGIELGAHGRLALMAKLAEGTGIQLPD
AAKSALQQMTGHSTHSLAAGLGLAGPMQTAQQSQQVMQSAQTEQANPIATQCFLLANMFD
PAEQAAKDNGEEDWAAELRDDVLEECRKHGGAVHCLVDKSTGNVYVKCPSIATAAAAVGV
LHGRYFAGRVITAAYVPVVNYHQLFPDAINATQLL
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggatgtccagcttgatcaacaggcattttacaacagatcgagcagttatagtggagag
gataccacttacaacggtaagggatcttcaggatcagcgaacaaggagaacagtaaagat
caaaaatcttctcgttctaggtctcgttcaagatcgataccgaaggatcgtagtgacggc
cgagatcgcgatgtgaaggatcgtgatcgaccgaccagagacactgaaaaggaatatagg
cgacgccgaagcagatcgaaggatcgtggagatactaagaaaaggtcgagatctcattct
agggacaacaagaagcgatcttccgataaggacgccaagaagggcagtagcaaagatgcg
aaggagtcgaaagacgttaaggaaagggaacgctcgaggtcaagggaccgcaaaaggaaa
tcgcgcagtcgttcaaaagatcgccgcagacgcaggtctccctcaaaggagcgcgccgcc
cgaaggcgcagtaggtcaaaggatcgtagacgagtcgaacgatcacgaagccgagatcgc
cgcaggcgcagcgcctcgagaagcaaaagccgtggccgtcgtagaaggtcgcacagcggg
ggccgcaggaagagatcaatctcgcggtcgccgattcgcggcagaggcctgagtccgttc
cagcggcgtggcggtgaagacatgagcacggaggagcgtgatttgcgtaccgttttctgt
atgcagctaagtcaacgtattcgagccagggatctcgaagaattcttcagtgccgtgggc
aaagtccgcgacgtgcgtatgattgttgataacaaaactcgcaagtcgaagggcattgct
tacgtcgaatttgtcgatctcgagtctgtgcccttggctatgggtcttaacgggcaaaag
ctgtttggcgtgccaataatcgtgcaggcgacacaggccgaacgaaaccgcatggccaat
cagcccggtggatttacggcggctgctgccgccgctgccgccaatggcaaagggccaatg
agactatatgttggcagtcttcattttgacattactgaccgcatgcttaaggaaatattc
gagcctttcgggcgagtggatcgtgttgagttaatgcgggaggattctggcaaatcaaaa
ggattcgcttttttgaccttccgcgaagccgatgctgccaagaaggcaatggaacagttg
aatggctttgagatcgccggacgtccaataaaggtgaaccacgtcactgaaagaggcacc
gggtcgctcaatcaccatcaccaccatcatcacaatcagcaacaagcacagcttgacgga
agccttccgtcggttcttgacaacgaggaacttgatcgtaccggcatcgagctgggtgct
catggccgattggctctcatggctaagctggctgaaggtaccggaattcaactgcctgat
gctgctaaaagtgctcttcagcaaatgacggggcacagcacacacagtctggccgcagga
cttggcctggccgggccaatgcaaactgctcaacagtcgcaacaggtgatgcagtcggca
cagaccgaacaggcaaacccgatcgctacccagtgttttcttctggccaacatgttcgat
cccgccgagcaagcagctaaagacaacggagaagaagattgggccgctgagttacgtgac
gacgtactggaagagtgtcgaaaacatggcggagcggttcattgcttagtcgataagtca
acaggcaatgtgtacgtgaaatgtccgtcgatcgccacagctgcagcagccgtcggggtg
ctacatggacgctattttgctggacgagttattacagcagcttatgtgccagtggtcaac
tatcatcagctctttccggacgcaatcaacgcgactcaactcttgtag
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