Varroa jacobsoni: 111270656
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Entry
111270656 CDS
T07417
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
vja
Varroa jacobsoni
Pathway
vja03020
RNA polymerase
vja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111270656
09124 Replication and repair
03420 Nucleotide excision repair
111270656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vja03021
]
111270656
03400 DNA repair and recombination proteins [BR:
vja03400
]
111270656
Enzymes [BR:
vja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111270656
Transcription machinery [BR:
vja03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111270656
DNA repair and recombination proteins [BR:
vja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111270656
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
111270656
NCBI-ProteinID:
XP_022706740
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MYEPEEEMEEEDPDEITADLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQKIVED
TPPIDLQAEATHSSGEIETPPRYLVKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYS
APLYVDITKTVIREREDPIETQHQKTFIGKIPIMLRSTYCLLYSLTDRDLSELNECPLDP
GGYFIINGSEKVLIAQEKMATNTVYVFQMKDGKYAFKAECRSCIEHSSRPTSTLWVNMMA
RGGSGVKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMV
KPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKK
AYYLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRGLFKNLTKEVRMFAQK
FIDKGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARPGVSQVLNRLTYASTLSH
LRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSPI
LEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRDPEQLMLTLQKLRRQMDIIVSEV
SMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKRKHIDQLKEREYTNYSWQDLVASGV
VEYIDTLEEETVMLAMTPDDLHQDKGLAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINAIV
AIMSYTGYNQEDSVILNASAVDRGFFRSVFYRSYKDSESKRMGDQEETFEKPHRDSCQGM
RNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLESTNKRYSKRDASTFLRNSE
TGIVDQVMLTINSDGYKFCKIRVRSVRVPQIGDKFASRHGQKGTCGVTYRQEDMPFTVEG
LTPDIIINPHAIPSRMTIGHLIECLQGKVASNKGEIGDATPFNDAVNVQKISNILMEYGY
HLRGNEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR
DGGLRFGEMERDCQISHGAAQFLRERLFFASDPYRTHICNICGLIAIANLRNNIFECKGC
RNKTQISQITLPYACKLLFQELMSMNIAPRMMVLPTKK
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtatgagcctgaggaagaaatggaggaggaggatcctgatgaaataaccgcagatctc
tggcaggaagcttgctggattgttatttccgcttactttgatgaaaagggtttggttcga
cagcaactggactcgtttgacgagttcatccagatgagcgtgcagaagatcgtcgaagac
actccacccattgacctacaagcagaagctactcactcatcaggtgaaatcgaaactcca
ccccgttacctggtcaaattcgaacagatttatctgtcaaagccgactcactgggaaaaa
gatggtgcgccaacgcctatgatgcctaacgaggcgcgactcaggaaccttacttactca
gctcccctgtacgtggacataacaaagactgtaatccgcgaacgtgaggatcccatcgaa
acgcaacaccagaagacgttcattggcaaaattcctatcatgcttcgatcgacgtattgt
cttttgtactcgttaactgatcgagatctgtccgagctgaacgagtgccctctggatccc
ggcgggtacttcattatcaacggctcagaaaaagtattgatagcccaggagaagatggcc
acgaatacagtctatgtgttccagatgaaggacggcaaatacgccttcaaagcagagtgt
cgatcgtgtattgagcactcgtctaggccgacgtccacattatgggttaatatgatggct
agaggagggtcaggtgttaagaaagctgccatcggccagcgtatcattgctattctgcct
tacatcaagcaggaaatcccaataatgatcgttttccgagctcttggcttcgttgctgat
agagatattctcgaacatatcatctatgactttgaggaccctgaaatgatggaaatggtt
aagccgtcactggacgaagcattcgtcattcaagagcagaacgtggctttaaatttcatt
ggtgcccgaggtgctcgtccaggcgttacaaaagagaaacgtatcaagtatgcaagggaa
attctacaaaaggaaatgttaccccatgtgggagtctcggatttctgtgagacgaagaaa
gcttactatttgggctacatggtacacagattgctgttagcggctttgggtcgacgagaa
ctggatgaccgtgatcactatggtaacaaacggctggatttggctggccctttaatggcg
tttctcttccgaggtttgtttaaaaatctaacgaaggaagtgagaatgtttgcacaaaag
tttattgacaagggcaaagatttcaacctagagctggctatcaaaacaaggattattagc
gatggtttaaagtactcgctggctactggcaactggggtgatcagaagaaggctcaccag
gcccgtcctggtgtgtcgcaagtgttgaatcggctaacgtacgcctcaacgttgtcccat
cttcgacgtgtcaattcacctatcggtcgtgatggaaaattggcgaaaccgcgccagtta
cataataccctatggggaatgatttgtccagccgagacgcctgaaggacatgctgtaggt
ctcgtaaaaaatttggccctgatgtcttacatttctgtaggatcgcaaccgtcgccaatc
ctagagttcttggaggaatggagtatggaaaatctcgaggagattgctccatcggcaatc
gccgaagcaaccaaaatcttcgtcaatggttgctgggtgggcattcatcgtgatcctgag
caactgatgttgacactgcagaaactacgaagacagatggacattatcgtatctgaggtg
tcaatggttcgggatatccgcgatcgtgagatccggatatatacggatgcaggccgtatc
tgtagacctttgctcattgtggagaaccagaaacttcttctaaaacggaagcatatcgat
cagctgaaggaacgggagtacacgaattattcatggcaagatcttgtcgcatcaggtgtc
gtagagtacatcgatacacttgaggaggaaacagtcatgcttgccatgacacccgatgat
ctgcatcaagataaaggacttgcttattgtagtacctacacacattgtgagattcatccg
tcaatgattcttggtgtatgtgcgtctatcattccgttccccgatcacaatcaatcacct
cgtaacacttaccagtccgctatgggcaagcaagctatgggcgtatatatcaccaacttc
catgtgcgaatggatacactcgcacacgtactttattatcctcataagcctttaacgaca
acgcgttctatggagtacctgcgttttcgagagctacccgctggtatcaatgcgatcgtg
gctattatgtcgtatacaggctacaaccaagaagattctgttatcctgaacgctagcgct
gttgatcgtggcttttttcgatccgtcttctatcgctcgtataaggactcggagagcaaa
cgtatgggcgatcaggaagagacgttcgagaagcctcatcgcgacagttgccagggtatg
cgaaacgccatttatgacaagctcgacgatgacggaatcatcgctccgggtactcgtgta
tctggcgatgacgttatcattggtaaaacaattactttgccagagaatgatgatgacctg
gaatcgacaaacaagcgatactcaaaaagagacgcgtcaacattcctgagaaactcggaa
acaggtattgtcgatcaggtgatgctgactatcaatagtgatggctataagttctgcaag
atccgagtccggtcagtgagagttccacaaattggtgataaattcgcttcacgccatggg
cagaaaggaacatgtggagttacctacagacaagaggacatgcccttcactgtagaaggt
cttactccagatatcatcatcaatccgcacgccattccatcgcgtatgacaatcggtcat
cttattgagtgccttcaaggcaaggtagcttcgaacaaaggcgaaatcggcgatgcaaca
ccatttaatgatgcagtcaacgtacaaaagatctctaacattcttatggagtacgggtat
cacttgcgaggcaatgaagtcatgtacaatggacatacgggtcggaaggttaacgcccaa
atttttctcgggccaacctattatcagcgactgaagcatatggtggacgataaaatccac
tcgagagcccgtggcccagttcagattttggttcgccaacctatggagggccgtgcacgt
gacggaggtctgcgtttcggcgaaatggagcgtgattgtcagatatctcacggcgctgcg
cagtttttacgagaaaggctgttctttgcctccgatccataccgcacgcacatctgcaac
atttgtgggctaatcgctattgccaaccttcgtaacaatatcttcgagtgtaagggctgt
cgaaacaagacgcaaatctcacaaatcacattgccgtatgcttgtaaattactcttccaa
gaacttatgtcaatgaatattgctcctcgaatgatggtactaccaacgaagaaatga
DBGET
integrated database retrieval system
