Varroa jacobsoni: 111271150
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Entry
111271150 CDS
T07417
Name
(RefSeq) replication factor C subunit 4-like isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
vja
Varroa jacobsoni
Pathway
vja03030
DNA replication
vja03410
Base excision repair
vja03420
Nucleotide excision repair
vja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111271150
03410 Base excision repair
111271150
03420 Nucleotide excision repair
111271150
03430 Mismatch repair
111271150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vja03032
]
111271150
03036 Chromosome and associated proteins [BR:
vja03036
]
111271150
03400 DNA repair and recombination proteins [BR:
vja03400
]
111271150
DNA replication proteins [BR:
vja03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111271150
DNA Replication Termination Factors
ELG1-RFC complex
111271150
Chromosome and associated proteins [BR:
vja03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
111271150
DNA repair and recombination proteins [BR:
vja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111271150
Check point factors
HRAD17(Rad24)-RFC complex
111271150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Rep_fac_C
DNA_pol3_delta2
Rad17
AAA_22
AAA_3
AAA_11
RuvB_N
AAA_16
AAA_14
RCF1-5-like_lid
AAA_2
AAA_24
AAA_5
bpMoxR
AAA_28
AAA_30
Cdc6_lid
AAA_assoc_2
ResIII
Viral_helicase1
MCM
Mg_chelatase
AAA_19
nSTAND3
AAA_7
ATPase_2
DEAD
AAA_25
RNA_helicase
DUF815
MeaB
AAA_18
Motif
Other DBs
NCBI-GeneID:
111271150
NCBI-ProteinID:
XP_022707479
LinkDB
All DBs
Position
Unknown
AA seq
332 aa
AA seq
DB search
MDLTEIEMSRQEKDLPWIEKYRPKTVDDVASQDEVVSVLKKCLTSGDLPHLLFYGPPGTG
KTSTILALARDLFGTEFRQRVLELNASDERGISVIRDKVKTFSQMTANQGKIRYRIVILD
EADSMTRDAQTALRRIMEKYTKTTRFCLICNYVTKIIPPLNSRCSKFRFKPLPTQVLIDK
LDTICAIESVSFANRKSDLCFLIEVSEGDMRRALTLLQSAHRICRDSTGVTKEDIGSIAG
VIPDQIVRDLYSEPVLDRLTKKVREFIREGYSGDQLLTQLLQVVIEDDAITDINKAKLLE
KIAVVEYRLKDGASELIQLQDLGATIVEMTRK
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggatttgacggaaattgaaatgagtcgccaggaaaaagacctaccatggattgaaaag
tatcggccgaaaacggtcgatgatgtagcttcacaggacgaagttgtttccgtcttaaag
aaatgtctcacctcgggtgacctgccccatcttttattttatggaccgcctggaaccggt
aaaacgtccacaatccttgctctcgctagggatcttttcggaacagagtttcgccaaaga
gtacttgagttaaatgcctcagatgagcgaggtatctccgttattcgagataaggtaaaa
acgttctctcagatgacggcaaatcagggtaaaattcgttacaggattgtcattctcgac
gaggctgactcaatgactcgagatgctcagacagctcttcggcgtataatggaaaaatac
acaaaaacaacacgcttttgtcttatctgtaactacgttaccaaaattatacctccgctc
aactccagatgctccaaatttcgtttcaagccactgcctactcaggttctgattgataaa
ctggacacgatttgcgctatcgagagcgtttctttcgccaatagaaaatcagacctttgc
ttcttgattgaggtgtccgaaggtgatatgagacgagccctaaccctgttgcagagcgca
catcgaatctgccgtgactccaccggtgttacaaaagaagatatagggtccattgctggt
gtgataccggatcagattgtgcgagacctctattcggagccggtactcgataggctcacc
aaaaaggttcgggagtttattagagaaggttactcaggggatcaactactcacgcagctg
ctccaggttgttattgaagatgacgccataaccgacattaataaggctaagcttcttgaa
aaaattgcggtagtcgaatatcgtttgaaggacggcgcttctgagcttatccaactacag
gatctcggtgcaaccatagtggaaatgacgcgaaaataa
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