Varroa jacobsoni: 111271592
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Entry
111271592 CDS
T07417
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
vja
Varroa jacobsoni
Pathway
vja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111271592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111271592
03041 Spliceosome [BR:
vja03041
]
111271592
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111271592
Spliceosome [BR:
vja03041
]
Complex B
Other components
Prp19-related factors
111271592
Complex C
111271592
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_2
Mad3_BUB1_I
ARM_TT21
TPR_8
NRDE-2
TPR_12
ARM_TT21_C
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
111271592
NCBI-ProteinID:
XP_022708223
LinkDB
All DBs
Position
Unknown
AA seq
873 aa
AA seq
DB search
MAEVIMDAQMVAVLFEEDDVAYEEELLRNPYSVRHWLRYAEFKRQRTSKGNRDAVNLVYE
RALKVLPGSYKIWHQYLTLRVKALEEMKLYPSDSAFEDVSNVFERALVWMHKMPRIWLMY
CEFLHRRRFVTRLRHTFDRALRALPITQHDRIWPDYLAFVEYHDIPETGVRVYRRFLKLS
PESREKAVDYFISIERLGEAAQLLVDMVNDPEFTSARGKPKHQLWMELCELISKNPDQME
ESNLRVDAIIRGGIKKYTDQQGKLWCSLADYYIRSRLFERARDVYEEAMESVLTVRDFSQ
IFETYSHYEYGLIRNMLAQEIQTKESDLEINLKMARYEYLMDRRPLLLNSVVLRQNPHNV
GEWLKRVKLLRDDVKEIIRTFTKAVQTVDPKLACGGKLCQIWIEFAKLYESKDQVDDARI
IFRKATQVPYAKVDDLANVWCEYAELELRHDNIEEAIKLCRTATTPPSRQVAYHDQSETV
QLRLHKNIKVWSLYADLEESFGTLQTTKAVYDHIIDLRIGTPQIILNCALFLEEHNYFEE
AFRVYEKGVALFKWPNVYDIWHTYLSKFLKRFAGTKLERARDLFEQCLEQCPSKYAKNIY
LLYAQLEEEHGLARHAMSIYERAAEVVPDNEKREMFELQIKRAATLFGLTHTRPIYEKAI
ENLPDADSIVMCMQFAQLECKLGEVDRARAIWMHCSQMCDPRTQPQFWSAWKEFEVSHGN
TDTAREMLRIKRSVQATFNTQVSLNLAVPYSSQTTSAVINTNEHPSKTQMQQPAVGITGK
ALTFIRAQDTEPAYEETRADNPDEIELPSEDDEDGEDPESLSENTNKNASADRRDCGEED
DDESDYEKDKVETKPVPQGVFGNLKKNQHDDSD
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagtcatcatggatgcacagatggtagctgttctattcgaagaggatgacgta
gcatatgaggaggaattgttaagaaacccgtattccgttcgtcattggctacgctatgca
gaatttaagcgacaacgcacttccaaaggaaatcgggatgccgttaacttggtatatgaa
cgagccttgaaagtactaccgggctcatacaaaatatggcaccagtatctcacgcttcgt
gtcaaagctctcgaagagatgaaactttaccccagtgactcagcctttgaagatgtgagc
aatgttttcgagcgggctcttgtttggatgcacaaaatgcctcgcatatggctgatgtat
tgtgaattcttacaccggcgacgctttgtcacacgacttcgacacacatttgatcgagcc
ttgcgcgctttaccgataacgcagcatgaccgcatttggccagattacctagcgtttgtt
gagtatcatgacattcctgaaacaggcgttcgtgtatatcgtagatttctgaagttgagc
cccgaatcccgcgagaaagcggttgattacttcatctcgattgagcgactgggtgaagcg
gctcaactcctagtagacatggtgaacgatcctgagtttacttctgcgcgagggaaaccg
aaacatcaactttggatggagttatgtgaactcatatctaaaaaccctgatcaaatggaa
gaaagtaaccttcgtgtagacgccataatccgaggtggcatcaaaaaatatacagaccaa
caaggtaagctatggtgctctctagcagattattacatcagatcgaggctgtttgaacga
gcacgcgacgtgtatgaggaggcaatggaaagtgtgttgacagttagagatttttcgcaa
atctttgagacgtactcgcattacgaatacggcttgataaggaacatgctagcgcaagaa
attcagacaaaggagagcgatctggaaattaatttgaaaatggcaaggtacgaatacctt
atggatcgccggccgctactgctgaattcggtggtgcttcgacagaatccacataacgtc
ggtgaatggcttaaacgcgtcaaattactgagggatgatgtaaaagagatcattcgcaca
ttcacaaaggctgtacaaacagttgatccaaaactagcatgcggaggaaagctctgtcag
atatggatcgagtttgctaaactttacgaaagtaaagatcaggtagatgacgcccgaatc
attttccgtaaggcgacccaagtgccatacgctaaagtcgacgatctggccaacgtgtgg
tgtgagtatgctgagttggaattacgacacgacaacattgaagaagccatcaaactctgc
cgtactgccacaacacccccgtcacgacaggttgcctatcacgatcaatcggaaactgtg
caactacgacttcacaagaacatcaaagtgtggtctctatacgccgatctagaagaaagc
tttggtacccttcaaacgacgaaggcagtctatgatcacatcattgatcttcgtattggg
acaccacagatcatcctgaattgtgctctttttcttgaggaacacaattactttgaggag
gcgttccgggtctacgaaaaaggtgtagctctgtttaaatggccgaacgtttatgatata
tggcacacatatctaagtaagtttcttaaacgttttgctggaacgaagctcgagcgggca
cgtgacttgtttgaacagtgcctcgagcaatgcccctcaaaatacgcaaaaaatatctat
ttgctatatgcacagctagaggaggaacatggtctggcgcgtcatgccatgtccatctat
gagagagctgccgaagtcgtgccggacaacgagaaaagagaaatgtttgagctgcagatt
aagcgcgctgctacgctgtttggtttaactcatacgaggccaatctatgaaaaggcgatt
gaaaatctgccagacgcagactccatcgtgatgtgcatgcagtttgcacaattggagtgc
aaactgggcgaagttgatcgagcgcgcgctatctggatgcactgctctcaaatgtgcgac
ccacgcactcaacctcaattttggagtgcctggaaagaattcgaagtctcgcacggtaac
accgatacggctcgggagatgcttcgaataaagcgtagcgtacaggctacatttaataca
caggtaagccttaatctggctgttccatacagttcgcagactacttctgcagtaataaat
acgaacgaacatccgtcaaaaacacaaatgcaacagcccgcagtcggcattactggcaaa
gccctgacatttatccgtgcccaagatacggaaccggcgtacgaggaaacacgggccgac
aaccccgacgaaatcgagctcccttcagaagatgacgaagatggggaagatccggagagc
ctaagtgagaacaccaacaagaatgcatcggctgataggagagattgtggcgaagaagat
gacgatgaatccgattatgagaaggataaagttgaaacgaagccagtccctcaaggagtt
tttggaaatttaaaaaaaaaccaacatgacgatagtgactaa
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