Varroa jacobsoni: 111271733
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Entry
111271733 CDS
T07417
Name
(RefSeq) regulator of nonsense transcripts 2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
vja
Varroa jacobsoni
Pathway
vja03013
Nucleocytoplasmic transport
vja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111271733
03015 mRNA surveillance pathway
111271733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111271733
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111271733
mRNA cycle factors
P-body specific factors
111271733
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
111271733
NCBI-ProteinID:
XP_022708437
LinkDB
All DBs
Position
Unknown
AA seq
1161 aa
AA seq
DB search
MADDKGKTFGGIRSELRRENLAPVRATENALALRDSSLKKNTAFVRKIKTFSEAQQLSVL
NDIRSLNLSKYISEICQAIVESKFKLSDITSLVQVCSRLHVEYADFASSLLDCIQKSVSS
QAVNPAKARVDLRLSAELLLAGVFPLKEGFQLLKHFLQEMCNQSQQSLSAVISLCKSCGE
DLLALSPGAPNDIYVPLDKQKLLQMMVREYFKSICRYATREHGELCKMQKKHKHTVQSKG
VAPQEMTEKLENAQMTFVKLTSSLEQLAGLLGESAPQFSEPEEPPEGEGIVQGVLIETEL
SEESLWEDSDTQAFYEHLPDLKAIMPAILKDNTKDDKENYDELGRDEEKSVSPSPEGAGG
EAEAEEDLAEKAEKEMRKVETKPQLDLFLKQLPQCLNRDTIDQMAEQFCFNLNTRPNRYK
LTRALFLVPRTRLDLLPLYSRLVAILKPVAVDLGEELCALLLKDFSYQLRKKDQMNIETK
VKTVRFLAELTKFRVLPMSETLRCLKKLLGDFSHHAIDMSCHLVECCGRFLFLHPDSHGP
TRALVDQMLRKRTVQNLDPRHQLMVDNACAVVTSIAAPRPPARVVQKTPIERYIRKLLYQ
ELYKGTVDKVVRQLRKLDWSLGSPHLHMAIRLLSNAHEVRYFNIRFLAHVVATLATYQDG
VGPRVVDAVLEEIRLGMEVIDPKYNQRRVAAVHYLGELYNYSMTESALIFTVLYSLITFG
AGTPLDPPENVFRLKLVCCLLDTCAVYFDTGSAKKRLDSYLHFVLLYFWKKKEDFGENFP
VTVELHLRESIHPLRPKFQWPKSLEAAHAAVNKLLNQAITAKAEKDAKNASIKNGGSRNQ
LTGQSVTVENGTAALISGVASGLTPAAEDSEGMSDGAEEDGEDEGDEDDDEEDDDDDDDD
ETESDELRDEPEEEVEPDEFQREFEAEFEEMVYESMAQRSQDRSQQPQVKEIMVPQLSSQ
QLQLQKTGCSSSQLLGTGTFSTSGITPPSGLLSLSAGATADESLSDNNVTNHATISGYNA
NNSTANDVSSNNNSNGNSNIPNAGSSGGSAGIGPGAATTGGATNFVIMMRSQNNRNKPLL
RQIQLEDSDELAKKIALTQKREREEKQRMKQLTLNMNMRQEEESWNDDAPDEHLIGPERK
FVHPKGAPDADLIFGSSSRRR
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgacaaaggcaaaacgtttggagggattcgatccgagctgcggcgggaaaat
ttggctccggttcgcgctaccgaaaatgctctggcactcagagactccagccttaagaaa
aatacggcgtttgtacgaaaaattaaaaccttcagcgaagctcaacaattatcggttctc
aatgacattcgatcacttaatctgtcaaagtacatctcggaaatttgccaagcgattgtg
gagtcaaagtttaagctcagcgatatcacttcgcttgtacaggtgtgctctcgacttcat
gtagagtacgccgattttgccagttcgttacttgactgcatacagaaatcggtgtcgtct
caagcagtaaaccctgccaaagctcgagtggatctccgacttagtgccgaactcctcctc
gccggagtgttcccgttaaaagaaggatttcaactactcaagcattttttacaagaaatg
tgtaatcaaagccagcagtcattaagtgcagtgatctcattgtgtaagagctgcggagag
gaccttctcgcgcttagtcctggggcaccgaatgatatttatgtgcctctcgacaagcaa
aagttacttcagatgatggtgcgtgaatattttaagtcgatttgtcgatatgcaactcgc
gaacatggcgagctgtgtaaaatgcagaagaaacataaacacacagtacaatcaaaaggg
gttgcgccgcaggagatgacggaaaaattggagaatgctcagatgacatttgtcaaattg
acgagttcacttgagcagctggcaggattgctaggagaaagcgcaccacagttcagcgaa
ccggaagaaccacccgagggcgagggaatcgtgcagggagtgttaatagagacggagttg
tcggaagaatccttatgggaagattcggacacgcaggcattctacgaacatcttccagat
ttaaaagccattatgcccgcaattttgaaggacaatactaaggacgacaaggaaaactat
gacgaactcggtcgagacgaagagaaatcggtatcgccgtcacccgaaggcgccggaggt
gaggccgaagctgaggaggatctggccgaaaaagcggaaaaagagatgcgaaaggttgaa
acgaagccgcagttggacttattcctcaaacagctgcctcagtgtcttaatcgagacacc
atcgaccagatggcggaacagttctgcttcaaccttaacacccggccaaatcggtataaa
ttgacgcgagcgcttttcctcgtgcctcgaacccgtctcgacctgcttccgctgtattcg
cgactcgtagctatccttaaaccagtcgctgttgatctcggagaggagctgtgcgcgttg
ctgctcaaggacttctcgtatcagcttcgcaagaaggaccagatgaatatagaaaccaag
gttaaaactgttcgctttttagcggagctgacgaaattccgagttcttccaatgagcgag
acactgcgttgtttgaaaaagctccttggagacttttctcaccatgcgattgatatgagc
tgccatttagttgagtgctgtggacgattcttgttccttcatccggatagccacggtccc
acccgagcccttgtggatcagatgctgcgcaaacgtacagtgcaaaatctcgatccccgg
catcaattgatggttgacaacgcctgtgccgtggtcacatctattgccgctccaaggccg
cctgcccgagttgtacagaaaacaccaattgagagatacattcgtaagctcttgtaccaa
gaactgtacaaaggaaccgttgacaaggttgtacgacagttgcgcaagcttgattggagt
ttgggttcacctcatctccatatggcaattcgacttttaagcaatgctcacgaagtgcgt
tattttaatattcgatttctggctcatgttgtagctacattggccacgtatcaggacgga
gtggggcctcgtgttgtcgatgctgtactcgaggaaattcgtcttgggatggaagttatt
gaccccaaatataaccaaaggagagttgcggctgttcactatctaggcgaactctacaac
tacagcatgaccgaaagcgcccttatattcacggtactttattcactgatcacgttcggg
gctggtacgccgctggacccaccagaaaatgtatttaggctgaaactggtgtgctgcctt
ttggacacatgtgcagtgtactttgataccggcagtgctaaaaaacgcctggatagctat
ctgcacttcgtacttctttatttttggaaaaaaaaagaagatttcggcgaaaacttcccc
gttaccgttgagcttcacctacgggagagcattcatccgctcagaccaaagtttcaatgg
ccgaaatctcttgaggcggcgcacgcggcagtaaacaaattacttaatcaagctataact
gcaaaagctgaaaaggacgctaagaacgcgtctattaaaaacggcggcagtcgaaaccaa
ctaacagggcagtcggtgacggttgagaatggcacagccgccctcatatctggtgtcgcg
tctggtttgacgccagcagccgaagattccgagggaatgtcggatggagccgaagaggac
ggtgaagacgagggcgatgaagacgacgatgaagaagatgatgatgatgatgatgatgat
gaaaccgagagcgacgaactgagggatgaacccgaagaggaggttgaaccagacgagttc
caacgggagttcgaggccgaattcgaggagatggtctacgagagtatggcgcaacgctct
caggaccgcagtcaacaacctcaagtaaaggagatcatggttccacagttaagcagtcag
caactccaattgcaaaaaacgggctgttcatcgtctcagttactggggaccgggaccttt
tccactagtggcataacgccgccttctggccttttgtctctgtctgctggcgcaacggcc
gacgagtctttaagcgacaataacgttacgaatcacgccactatcagtggttataatgcc
aacaacagtactgctaatgacgttagcagtaacaataacagcaacgggaacagcaacata
ccaaatgctggttcctcagggggatccgcgggcattggcccaggtgcagcaacaactgga
ggagcaacaaattttgttatcatgatgcgatcgcaaaacaaccgcaacaaaccgctacta
aggcagatccagctcgaggatagtgacgaactcgcaaagaagattgcactaacgcaaaaa
cgtgaacgcgaagagaaacaacgaatgaaacagcttacgctgaacatgaatatgaggcaa
gaggaagaatcgtggaacgatgacgccccggatgaacatttaattgggccagaacggaag
tttgttcatccaaagggggctcccgatgcggatcttattttcggatcgagttcacgtaga
aggtag
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