Varroa jacobsoni: 111271738
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Entry
111271738 CDS
T07417
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
vja
Varroa jacobsoni
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vja03009
]
111271738
Ribosome biogenesis [BR:
vja03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111271738
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
TIP120
Niban2
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
111271738
NCBI-ProteinID:
XP_022708447
LinkDB
All DBs
Position
Unknown
AA seq
2787 aa
AA seq
DB search
MGREELRFRSFSERVASISIDVIHRINRDQQYIVGATETHFKASLDKWLELNCTQKFTEL
VNFVGPDVYSLPHLLHAKDGIFKVLQQQLGEEKSPSLEANLELVVALARDLQDQFYPEFA
TFFTVITSTHLQQRDADVLEKVFTCLAYLFKFQWRFMVEDIESVFDLYKPLLSERHQDHT
KAFAAESFAFLLRKVADKKYLLNIIFGHADRDSSLARGLGVLFFEVLKGVKTRVHSCAEQ
MFPLIMQRLAHRSGDSTDTRLIVIRTMLELLCNHLTPDYSQFLWKTLKECLLSSGDLTPS
HFAALCQCYGEVISFKDGKLASLNPDDICNTFAKAFSQCPEEAFPHLLDASALALTVCEE
RGAKEIFVSNVLEAFSVSEQIVEEDALLKFMDNLAKLNCFHETVVPILWKYSEQQEGRRA
LRLLSKLESLAGMKIHCAASLVEWKPLVCLQRIERSSLSDYLFATLTLTKENVENIEHLE
CFWESCCLVRHLQSLWDSTKVVEQLQKALRVLIKRRTMDLLQLACIQECVRSLVVLKVSV
DPKCLMLVLRKYKDPFILRSMDLAVYSTTEKDSHLQTELFSELWWLLTSPYAIVRFLALR
ILSQFEPPEKKIPKGKFAVCRYMLALEGIAVTVQEFKNRNNLMEKLRFETVLRNAVDPTL
HRFTLAFLFGQLHISFSQLWSTVKKLIATYMDYEKFWEVMNRQFDETTKAIQTQEHFIGP
PISNEIMDTTLVDLLTVKETYENVDYDLHRVLLWNVVEQVTDAAIVSDVPYKYFLNLFEE
EFRPRSEFIASERVLKEHLLSDNENDMDVKMDEDGAIIIDDSDVEDDNVRPEGNTSIMND
TDTRKSTNAPKYGIRSKEAKAITPGRKCVASLKAALTALAHSELKQLEQSKREEFEERFG
DLLMYPEAAIQKLALECLLACGVSVLHCCKENLMKLLDDKEWMNVLNESFLANDTSSVQR
KNEAGREKTKQMQRLPDKQRKKVLPYVMRLLFGRMLTKKTGHRSKSRVASKHAAVLRFLA
SSRESDLIYFIELILLPLRRYNISVDDDDGVSTERLLENVSFDPENAVPVRRIRQVLNNI
RHVLNHMSGVLPTFLPLLLRSVLLLLRYSNLVTQRAGDINRLYSQSIKRARMLCVDIVYH
YFTQLDRFAMKLNDVHLFFELYVWRTLQELVRFPGDPSARVFRLFLCFAQKENLQFLLGL
KSRDDPTRTIMSDLMTILGTSSAHPDVVKSIRDVIKYLLSDVAPDETVARIIYSLEDVDL
HDNTEPSTGFRIALPYTFVIISRSFEQMKEYDRPMHPVDRFILFKLSKYNTDPALASNML
VLLASMLHKKSRAKKNEDDTFEYETLCIIKNLIVAADSVADIYLSLCRMWAIVEGRNSRN
VLLSVFQMLSTKMSGIDAKVCDILGKLNSWDARLTEEPAYLQRIKGFRELVALTEAMKIP
EVQTALPLIHSCIYTSLRSSDLSLRDAATYALFKLITFCHDVLGEGHEVFFKTCVEQEIY
GSIKKGFRSNEETTRHECVKILTHILNTCGKRALFKELKSFQDTEKEKDFFECIVHIQLH
RRARALIRLSTALSARHISARSIMDVFLPLTESFLLKEEYAKQNIAEAAIQNLGSLASKL
PWRQYARLLEKYILLLSNKELCSVRANQKCIVKIIVTLLDAFHFDLSQLVSVFEENATTS
TTSSLPLRERLAPPDAPISLDAAVDLNMTEQEEAAEEIKEGLPTVNESGTLPPDGMVTVV
DVKVGKEILQTLKDVLLCKLQSAITRKGYYSTDGADDDNEENDVLRVSIAVGVVKLLSIL
PSKTFLRTNLSSVLLKVIVFLKSRLLPVRETARSALVKIINILGPCYLKYVIREMRSLLS
RGFQLHVLTFTVHAILEAVRSQMQPGDLDECTDDILEICLEEQFGEVADEKDITGITAKT
DEAKRTKSLDMFRIVAAVVSEDQLQRLLDAVEVKLLAGHSARIVSKCEKIFEQLTSGLET
NKGLSKVTIFIFCYKLLNENTHRLLITDPVLAKELKGETDSQRGIEDIDDTNRESTLPYE
RPDVFLVPKAPVRSHVGTLVSHKANVHVLVESALKLLRDILRKNRGQEMNKHLNMLDPFV
APLCQLQRSSYVKVTTLSMIVIQQLLHYPLPAFQAHLHIIISTAMSIIHKYLGTTQQSGP
NYEMLIAAFKTVRTILNEVETVELDEEQYKMLLTYIETDICDVERQGVAFSLLAAVIDKG
VNLPELHSLMRKVAEMSIQEEVTAIRNQARTLYQKYLFDYPIEPKLREKCVAFYLGQLEY
SVEEGRQSAAEMVYQIIKLYPENLLAKSALFFFVPLSASLVNDGSVIMRKMCYGCLKAFL
EKLNNNSRTSLYALAKKWLQDVSKVQKQFLGAQVIGCFAEVEKEQFAIRVDDLMNIFVKL
VKAKDDADQIDCEVENNEREQDRLVYLIWNSTIKILSHVRLLESETPAHRAICSSLMSSC
QAHLLYPHSWVRVAASRIFGLLFARYEPRKLAQTICKDEKSGSSNKQREAFSGDWLPCGG
RSLIDKLVISFLEQFQSRQVPNDLLDQLVKNLLFVGKVLLYLSHGTSEKTDRKLAKDASD
KNQKKDDESTGEFEYGREQTEGDNNQCGQSDHRTFGWFVFKIEKELRVLRVNNRTPNYEK
RTCLYKLLAALSLECPREVLQCYSHNFLRPLVRDLESTAKDQDFYQLVKDASHVIRREMG
FEQYQEGYARQLTELARIKAHRKQSKAVEKVLNPEVNLERKERRKRLDKTNRKRMLDERR
GKIQYKKPKYEADEIARVNREAENGKF
NT seq
8364 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgtgaggaactccggttcaggtcattttcggaacgtgtagcatccattagtatc
gatgttattcaccgcattaatcgggatcaacaatatattgtcggcgctacggaaacacac
tttaaggcttctctcgacaaatggctcgagctaaactgcacacaaaagtttactgagctg
gtaaattttgttggaccagacgtctactcattacctcaccttctgcatgccaaggatggg
atttttaaagtcctgcaacaacagctgggagaagaaaagtcaccctccctcgaggccaac
ttagaactagtggtcgcactggcaagagaccttcaagatcaattttatccagaatttgca
acatttttcacagttattacgtcaactcaccttcaacaaagagatgccgatgtgctcgaa
aaggtgttcacttgtctagcctatcttttcaaattccaatggcggtttatggtagaggat
attgaatccgtgttcgacctttacaaaccactgctttcggaacggcaccaggatcatact
aaagcgttcgcagccgaaagcttcgcttttctattgcgtaaggtagctgataaaaaatat
ctattgaatatcatctttggtcatgcagatcgggactcaagcttggcccggggcttgggt
gtcctcttctttgaagtgttaaagggtgtcaagacacgagttcattcttgtgctgagcag
atgttccccctaatcatgcagaggctagctcatcgaagcggtgattcgacagatacacga
ctcattgttatccggactatgttggagctactttgcaaccaccttacgccggactatagc
cagtttttatggaagaccctaaaggaatgtctcctgtcttcgggcgatttaactccgtca
cattttgcagcactttgccagtgctatggagaggtcatttcatttaaagacggcaaatta
gcgagccttaatcctgacgatatatgcaatacatttgcgaaggcgttctctcaatgtccg
gaggaagcgttcccgcatttgcttgatgcaagtgctcttgcactaacagtttgtgaggaa
agaggtgccaaggagatttttgtatcgaacgtgctggaagcttttagtgtatcagagcaa
atcgttgaagaggatgctctgttaaagtttatggacaacctggcgaagctcaactgcttt
catgagacggttgtaccaatattatggaagtacagcgagcaacaagaaggaagaagggcc
ttgcgtcttctttcaaaattggaatctttggcaggaatgaagattcactgtgcagcaagc
cttgtggagtggaaaccccttgtgtgcttacaaagaatcgaacggtcttcattgtccgac
tacctgttcgctacgttgactttgacaaaagaaaatgtcgaaaatattgaacatctggaa
tgcttctgggagtcgtgctgcctagtgcgtcatttgcaatctctgtgggactccaccaaa
gttgtggagcagcttcaaaaagctttgagggttttgattaagcgacgcactatggatctg
cttcagttggcttgcatccaggaatgcgtccgaagtctagtagtcctcaaagtaagtgtc
gaccctaagtgtttgatgttggtgctacgtaaatacaaggatccattcatcttgagatcg
atggatttggctgtctacagtaccaccgagaaagactctcatcttcaaactgagctcttc
agtgaactttggtggctcctaacctctccttacgcaattgtgcgattccttgcgctccga
attttatctcagtttgaaccgcccgaaaagaagattccaaaagggaagtttgctgtttgc
cgttatatgttagctcttgaaggaatcgcagtaaccgtgcaagagttcaagaataggaac
aaccttatggaaaagttgagatttgagacagtccttaggaacgctgtggacccgacacta
catcgatttactttggcttttttattcggccaactccacattagttttagccaattgtgg
tcgactgttaaaaaacttattgccacttatatggattacgagaaattctgggaggttatg
aaccgtcagtttgacgagactaccaaagctattcaaacgcaagaacacttcatcggtccg
ccgatatctaatgagatcatggatactacccttgtggatcttctcacagtcaaggaaact
tatgaaaatgtcgattatgatctacaccgagtgcttctttggaatgtggttgaacaggta
accgacgctgccatagtcagtgatgtaccgtacaaatattttttgaacctgtttgaagag
gagttccggccacgttcggagtttatcgccagtgagcgtgtcctaaaggaacacttgcta
agtgacaacgagaatgatatggatgtcaaaatggacgaagatggcgcaattataattgat
gatagtgatgtagaggatgacaatgtccggcctgaaggtaacacaagcataatgaacgat
actgatacgaggaaatcgactaacgcgccgaagtatggtataaggtctaaagaagctaaa
gcaattacgccaggaagaaaatgtgtcgcaagtttgaaggccgctttaaccgctttggct
cattcagagctcaaacaattagagcaaagcaaacgtgaagaatttgaggaacggttcggg
gatctgcttatgtatccggaagctgcgatacaaaaactggccttagaatgtctgttagca
tgtggagtcagcgtgttgcactgttgtaaagagaatttgatgaaacttctcgatgacaaa
gaatggatgaacgtgcttaacgaaagttttttggctaatgacacgagttctgttcagcgt
aaaaatgaagcgggtcgagaaaaaactaagcaaatgcaacgcttgcccgataaacagaga
aaaaaggtattgccgtacgtaatgcgtttactctttggaaggatgctgacaaaaaaaacg
ggacatcgctcgaagtcgcgagtagcgtcgaagcacgctgctgtgttgcgttttttagct
agctctcgggagtcagatctcatctattttatcgaactaattctactaccgttacgaagg
tacaacattagtgtagatgacgacgacggcgtctcaacggaacgccttcttgagaatgtg
tcatttgatcccgaaaacgccgtgcctgtgagacgcatcagacaggtccttaacaatatt
cgccatgttttgaaccatatgagtggtgtcctgccgacttttctacctcttctgcttcga
tctgtgttgttgctactgcgctattcgaatcttgttacacagagagccggcgacatcaac
cgtctttactcgcagtccatcaaaagagcacgtatgctctgcgtagacatcgtttatcat
tatttcactcagctggatcggttcgcgatgaaactgaatgatgtgcatttattctttgag
ctttatgtttggcgtacactacaggagctcgtgcgctttccaggtgatccatcggctcgc
gtattccgattgtttttatgctttgcgcagaaggaaaatcttcagttcttacttggtctc
aagagtcgcgatgatccaactcgaacaataatgtcagatctgatgactattctgggtaca
tcatcagcgcatccggatgtggtcaagtcaattagagacgtcatcaaatatcttctatcg
gacgtggcgcccgatgaaacagtggccagaataatttattcgttagaagatgtcgatttg
catgataacacggaaccgtcaactgggttccgtatcgcgctgccatacacattcgttatt
atatcccgttcttttgagcagatgaaagagtatgatagacccatgcatccagttgatcgg
tttatccttttcaagttaagcaagtacaacaccgatccggcattagctagcaacatgctg
gtacttcttgcatcaatgcttcataagaaaagtcgagctaagaaaaacgaggatgacacc
tttgaatacgaaacactgtgcataattaagaacctcatagtggcagccgattcggttgca
gatatctacttgtcactctgtagaatgtgggccatcgtggaaggcaggaatagtcgaaac
gtcctcctgagtgtgttccagatgctcagtacgaagatgtccggaattgatgccaaagta
tgcgatatacttgggaaacttaactcgtgggacgcaagactaaccgaagaaccggcctat
ttgcagagaatcaaaggatttcgagagctcgtagccttgactgaggccatgaaaatacca
gaggtgcagacggcgcttcctctcatacacagctgcatttatacatcgcttagaagcagc
gacctttcactgagagacgccgcaacgtatgcgctttttaagcttattactttctgccac
gatgttctaggtgaaggccatgaggtattttttaagacttgcgtcgaacaggagatatac
ggaagtatcaaaaaaggttttcgaagcaacgaggagacaacgcgccatgaatgtgtcaaa
atccttacacatatactgaacacctgtggaaagcgtgcgttgttcaaagaacttaagagc
ttccaggacacggaaaaggaaaaagatttctttgaatgcatcgttcacattcagcttcat
cgacgcgcacgagcactcattcgtctttcgaccgctttatctgcaaggcatatatctgcc
cgaagtattatggacgttttcctgcctttgactgaatcattcctgttgaaagaagagtac
gccaaacagaacattgccgaagctgctatacagaacttgggctcgctagctagtaagcta
ccttggcgacaatatgcgcgtttgcttgaaaagtacattttgctattatccaataaggaa
ctatgcagtgtcagagctaaccagaaatgtattgtaaagataattgtaactttgctggac
gcgtttcacttcgatctcagtcagttggtgtcggtgtttgaagaaaatgcaacaacatcg
acaacgagctccctgccgcttcgagagcgtttagctccaccagacgcaccaatttcactc
gacgctgcggtggatctaaacatgactgaacaagaagaggccgccgaagaaatcaaggaa
ggcctaccgacagttaacgaaagtgggaccttgccaccagacggaatggtaaccgtcgtc
gatgtcaaagtgggcaaagagattctacagactctcaaggatgtgttgttatgcaaattg
cagtcagccatcaccagaaagggctactactcgaccgatggcgctgacgacgataatgaa
gaaaatgatgtccttcgagtttcgattgcagtgggagtcgttaagctactaagtatcctg
ccaagtaaaacgttcctacgaacaaacctgtcgtctgtgttgcttaaagttattgtattt
ttgaagtcacgtcttttgcctgtaagggagacggcacgcagcgcgcttgtgaaaataatc
aatattctcggaccctgctatttgaaatatgtgatcagggagatgcgttcattgctcagc
agaggttttcaactgcacgtcttaacgtttacggtacatgccatccttgaagcagttcgc
tcccagatgcagccgggtgatcttgacgaatgtactgatgatattcttgaaatttgtcta
gaggagcagtttggcgaggtcgctgatgagaaggatatcacgggtataacggctaaaact
gatgaggcaaaacgaacgaaatcgctagacatgttccgcattgttgctgctgtagtgtct
gaggaccaactacaacgactgcttgacgccgttgaggtgaaacttttggcaggtcatagt
gctcgtatagtaagcaagtgtgagaagattttcgaacagctgacgtccggtcttgaaacc
aataagggcttgagtaaagtgacaatatttattttttgctataagttactgaatgaaaat
acccatcgccttttaatcaccgatccagtccttgccaaggagcttaagggtgaaacggac
agccagcggggaatcgaggatatagacgacacgaatagagaaagtacactgccctatgaa
aggcctgatgtctttctcgtcccaaaagcgccagtacgtagccatgttggaacgttggtg
tcgcataaggcaaacgtacatgtcctcgttgagtcggctctgaaattacttcgtgatatt
ttgcgtaagaatcgcgggcaagaaatgaacaaacatttaaacatgctagatccgttcgtg
gctcctctatgtcaactgcaacggtcttcgtatgttaaggtaacgacactgtctatgatt
gtcattcagcaactccttcattatccgctaccagctttccaagcgcatcttcacataatt
atctcgacggccatgtccatcatacataagtaccttggaacaacgcaacagagtggaccc
aactacgagatgctcatcgctgcattcaagactgttcgtaccattttgaacgaagtcgaa
actgtggagctggacgaagagcaatataagatgctgcttacctatattgagacggatatt
tgtgacgtcgagcgacagggagttgcattttcacttctggccgctgtcattgacaagggc
gttaatctccctgagttgcacagtctgatgagaaaggtggcagaaatgtcaattcaggaa
gaggtaacagctatacgtaatcaagcaaggaccctgtatcagaagtatctcttcgactat
ccgatcgagccgaaactacgtgagaaatgtgtagccttctaccttggtcaacttgaatac
tcggtggaggagggtcgccaaagcgctgctgaaatggtctatcagatcattaagctctat
cctgagaacctcttggcgaaatctgctttgttcttctttgtgccattatcagcgagtttg
gtaaatgatggttcggtaattatgcggaagatgtgttatggctgcctgaaggcgttctta
gaaaagcttaataataatagccgaacatcgctttacgcgcttgctaaaaaatggttgcaa
gacgtttcaaaggtacaaaaacagtttcttggtgctcaagttatcggctgtttcgcagag
gtcgaaaaagaacaatttgccattcgagttgatgatttaatgaacatattcgtcaagctc
gtaaaggcgaaggacgatgctgatcagatagactgcgaagtcgagaacaatgaacgagag
caagatcgtctggtgtacctcatttggaacagtacaatcaagatcctttcgcatgttcgc
ctacttgagtcagaaactccagcacatcgtgctatctgttcttccctaatgtcatcctgc
caggcgcatctactttacccacattcgtgggtgagggtcgccgcatcaaggatatttggt
ttactattcgccaggtacgaaccgcggaaactggcgcaaactatctgtaaagatgaaaaa
agcggtagctctaataaacagagagaggcattttccggtgactggttgccttgcggaggt
cggtcccttatcgacaaactagtcatatccttcttagaacagttccaaagcagacaagta
ccaaacgacctgcttgatcaactcgtcaagaacttgctgtttgttgggaaggttcttctt
tatctaagccacggaacatccgagaagacagatagaaagctagcaaaggatgctagtgat
aaaaatcagaaaaaggatgatgagagcacaggtgaatttgaatatggcagagagcaaacg
gaaggtgacaataatcaatgcggccaaagtgaccatcgcacctttggctggtttgttttc
aagatcgagaaagagttgcgggttttaagagtgaacaaccgaacacccaactatgaaaag
cggacgtgtttatacaagcttctggcggctctctcgcttgaatgtccacgagaagtcctg
cagtgttacagccacaattttcttcgcccactggtgcgtgatctagaatccaccgcaaaa
gatcaagacttttatcagctcgtaaaggacgcgtcacatgtaattcgtcgtgaaatgggt
tttgaacaataccaagaaggttatgctcgccagttaaccgagctggctcgtattaaggcg
catcgtaaacaaagtaaagctgttgaaaaagtgcttaacccagaagttaatcttgaaaga
aaagaacgacgtaaaaggctcgataagacgaaccggaaacggatgctggatgagcgacgc
ggtaaaatacaatataaaaagccgaagtacgaagccgacgaaatagccagggtaaatcgt
gaagctgaaaacggtaaattctag
DBGET
integrated database retrieval system
