Varroa jacobsoni: 111271828
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Entry
111271828 CDS
T07417
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 23-like isoform X1
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
vja
Varroa jacobsoni
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vja03021
]
111271828
Transcription machinery [BR:
vja03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
111271828
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med23
Motif
Other DBs
NCBI-GeneID:
111271828
NCBI-ProteinID:
XP_022708569
LinkDB
All DBs
Position
Unknown
AA seq
1396 aa
AA seq
DB search
MGSVDAVNSLVAQILRRDTLEEAFNAFIVHKEPLDGPKGGFNSGLVEELSVVLSNPTDTS
DAALRTFVSLATQLRSHKQLAKLLTILEQTANEGKVYPRQVCEAVMGGLDFQHAEFWVQA
LGLVERLLPKLDYKGCRDVLKLIFEKTQRIPSTVNLSCMRQLQVLESVAELLLDRDQALC
PSYLVLDDVQKRLVNKDWPHWKIARLVSSFVDSFRPVAQLVTIVGRSRLVPVVGHSAASG
YSWQIDRVYARFSLKGQLPYSPEATRSQTNLLRYVLAQPYSREMVCAMLGLNKQQKQRCI
VLEKQLIELIVTAMRRSEVEPLNSESLCQFWQNISSQLIYFVLFQYISFPDLVIGLHTQL
AASPLRKGRDQLMWVLLQFISGSIQKNSLNDFLPVLRLYDLLYPESEPLPFPDVTDPSCT
HKLAVTCIWVHLMKKAQGERGMQRPVPQALSVHLETLQQALSQHQTSDYWTSLLCNAYST
NVECFSRPMGVLVEAIQGSSGGHATATQPLSMGMLDSLTVHTKMSLIHNIVTHFMKVAPT
PASKQLSQNQQNQPQQILSPALVETYSRLLVYNEIESLGIKGFMSHVLPHAFRQQAWAIL
HTLLEMFSYRLHHIQPHYRIQLLSHLHMLAAVPQSNQTQLHVCMESTALRLITGLGSGEV
QPQLSRFQAEPKSLLSLDSEELNKALILSLARAIHVTGSESLSTVWCKDLLQAALTNTPH
SWSSLTLDCFPSSLAEFLRVNQSQRENKAQLKRSVEEEYRKWKTMSNENDIVAHFSQSPS
TSGQAGGGGTNPHLFVCLLWKMLLENDRIPPLAYKILDRLGARALSLHVRTFADFLVYEV
STCGQDQMLLNKSIDAVSDLIWKCYVIPLDRLILTLALRPFEGNEQQVGFFIIQRLLISN
GEFKSRVYDFVKENSPEHWTQSDWHERHQQFQRKYPEKFFWENLPDSNQPHHYLPVYFGN
ICLRFLPVMDIVIHRLIELPVNNSTTVSVESLLDHLGLLYRFHDRPLTYLYNTLHYYESK
LRERFGLRIKLVSAITGRMNECPLSDYFRQLVSQQQQSQEQKGRPGESGSNQSGAAPPSA
VTPPDMDYYRFILQRIVEAITGKKTSPVIDWRFNEFSNGAAHTLHVTCIELMALPVAPAA
VANGLLDVILLGHSHNVVPRDALPDWINAIGLVLTALPESYWAVLNDRILKLIETLPPTT
DIFQYMDLAGKQKSYTESSTSYVVALVHAVWYHASIGQLSQIPVFIKDRLKPVIRTEEQM
LVLCQLVAPFFQRISLERTRSLMEITRELYEILENVDKAQSQLRYMDNIVDLFYHIKYMF
TGDSVKADVDHVIRNLRPDLQLRLRFITHLNVGAQAGAAGSTGTDSQTGSTTAGTSQGQQ
NMGTSAGQTGSNVQQQ
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagttgacgcggtcaactccctggtcgcccaaattctacgacgggatactctt
gaggaagcgttcaatgcatttattgtgcataaggagcctctagatggaccaaagggaggc
tttaactctggactcgtcgaagagctgtcggttgttctttccaaccccacagatacctcg
gacgcggcactccgaactttcgtctccttggctacgcaactgcgcagccacaaacagctt
gccaagttattaaccatccttgagcaaacagcaaatgaagggaaagtttaccctcgtcag
gtgtgtgaagctgtcatgggaggacttgatttccagcatgccgagttttgggtgcaagcc
cttggcctagtagagagactcctaccaaaactcgactataaaggttgcagggacgtgctc
aagttgatttttgaaaagacacaacggatcccgtcaacagtcaatttgtcctgtatgcga
cagctacaagtgctggagtccgtcgccgagttgcttctagatagagaccaagcgctttgt
ccgtcatacctggttctcgatgatgtgcaaaaaagactcgtcaacaaggattggccacac
tggaagatcgcgaggctcgtatcgtcctttgttgatagttttcggccagtggcacagctt
gtcactatagttggaagatcgcgtttagtcccagtcgtggggcattccgctgcaagcggc
tactcctggcaaattgaccgcgtatatgcgagattcagcctcaagggccagttgccctac
agtccagaggcaactcgcagccaaacaaacttgctgcggtacgttttagcccagccatat
tctcgtgaaatggtctgtgcaatgcttgggctaaacaagcagcaaaaacagaggtgcatt
gttttggagaagcagctcatcgagctaattgtaacggcaatgcggcggtccgaggtagag
ccactcaactctgagtctctatgccagttttggcagaatatcagctcgcagctaatctac
tttgtcttgttccaatacatctctttcccagatctggtaatcggtcttcatacacaattg
gctgcctccccacttcgtaaggggcgagatcagttgatgtgggtacttctgcagtttatt
tcgggatcaatccaaaaaaattcgctcaacgattttctgcccgttttacgtctctacgac
ttactctatccggagtctgaacccctaccgtttcctgatgtcaccgaccccagttgcacg
cacaagcttgcggtgacatgcatatgggtacatcttatgaaaaaggctcaaggggagcgc
gggatgcaacgtccagttccacaggcgctttcagttcaccttgaaacacttcaacaggcc
ttgtcacaacatcaaacatccgattattggacgtctcttctatgtaacgcttactccaca
aatgtcgagtgtttttctcggcccatgggagttctagtagaagcgattcagggcagttct
gggggacatgctacggctacgcagcccctttcaatgggcatgttggattcgttgaccgtt
cacacgaaaatgtcactaattcacaatattgttactcattttatgaaggttgcacccaca
ccggcatcgaaacagcttagtcaaaatcaacaaaatcagccgcagcagattctttcgcca
gctctcgttgagacctactctagactattggtgtacaacgagatcgagtctcttggcatt
aagggattcatgtcacatgttctgcctcacgcatttcggcagcaagcctgggcgatactt
cacacacttcttgagatgttttcgtatcgtctacatcacattcagccgcactacaggatt
cagttgctatctcacttacatatgctggccgcagttccccaatcaaaccagacacagttg
cacgtttgtatggagtctaccgcattgcgccttattaccggactaggcagtggagaggta
cagccacaactatccagatttcaggctgagccgaagtcattgctttcgttggactcggaa
gagctcaacaaggctctgatattgtcgctagcccgggcaatccacgtaactgggtcagaa
agtctctcaaccgtatggtgcaaggatcttctacaagccgcactgacaaatactcctcat
agctggagcagtttaacccttgattgcttccctagttcgcttgcggaattcctccgggtc
aaccaatcgcagcgtgaaaataaggcccaattaaaacggtcagttgaggaggaatatcgc
aaatggaaaacgatgtctaacgagaacgacatcgttgcgcacttctcacaatcacccagt
accagcgggcaagctggtggaggtgggactaatccacatctattcgtatgtctcctatgg
aagatgcttctcgagaatgatcgaatccctccgttagcgtacaagattcttgatcgtctc
ggagcaagagcactgtctctgcacgttcggacgttcgctgattttcttgtttatgaggta
tccacgtgtggtcaggaccagatgctcctaaataaaagtatcgatgcggtgagcgacttg
atctggaagtgttacgtcattcctcttgacagattaattctcacgcttgcactgcgaccc
ttcgagggtaacgagcagcaggtgggcttcttcattattcaacgacttctcattagtaac
ggcgagttcaagtcgcgcgtctacgatttcgtcaaagaaaattcgcctgagcattggacg
cagtctgactggcacgaacgtcatcaacagttccagcgaaagtaccctgagaaatttttc
tgggaaaatctgcctgactcgaatcaaccccaccactatttacccgtgtacttcggtaat
atctgtctgcgattcttgccggtaatggatattgttattcaccgtctgatcgagctcccg
gtaaacaactctacgacagtgtctgttgaaagtttgctcgatcatcttggactgctttat
cgctttcatgaccgtccgttgacttatctctacaatacccttcactattacgaaagcaag
ctccgtgagcgatttggactacggatcaaattggtatcagcgattaccggcaggatgaac
gagtgccctcttagtgattatttccgtcaactcgtcagccaacaacaacaatcgcaagag
caaaaaggaagacctggagaaagtggatcaaatcagagtggtgcagcgccaccttcagct
gtaactcctccggatatggactactacaggtttattctccagaggatagtagaagctata
acaggaaagaagacatctcccgttattgattggagatttaatgaattttcaaacggagca
gcgcacactttgcacgtgacatgcattgaattgatggctttgccagtggctccagcagcg
gttgccaacggacttcttgatgttattttactgggtcactcacataacgtggtgccacgg
gacgctctgcccgactggattaacgctattggtctggtgttaacagcccttcctgaaagc
tactgggctgtattgaacgaccgtatactcaaactcattgagactttgcctccgacaacg
gatatcttccagtatatggatctggccggaaagcagaaatcttacacggaatcatccaca
tcgtatgttgttgctctcgtacacgccgtttggtatcacgcgtcgatcggacagttgtca
cagatacctgtttttattaaggatcggctcaaacccgttatccgcaccgaagagcagatg
ttggtcctgtgtcaactggtcgctccatttttccagcgaatttctctggaacgaacacga
agtttaatggaaatcacgagagaattgtacgaaattctcgaaaatgtggataaagcgcag
agccagctccggtacatggacaacattgtcgatctattttatcatatcaaatacatgttc
accggtgactccgtgaaggccgacgtggatcatgttatccgaaacctacgaccagatctt
cagctaaggcttcgctttattacacatttgaatgtgggagcccaagctggggctgcagga
tcaactggaaccgatagccaaactgggtctaccaccgccggcactagccaaggtcaacag
aatatgggcacttcggcgggtcagactggtagcaacgttcaacaacagtga
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