Varroa jacobsoni: 111271852
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Entry
111271852 CDS
T07417
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vja
Varroa jacobsoni
Pathway
vja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111271852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vja03021
]
111271852
03019 Messenger RNA biogenesis [BR:
vja03019
]
111271852
Transcription machinery [BR:
vja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111271852
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111271852
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
VHS
Pfc11_Clp1_ID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
111271852
NCBI-ProteinID:
XP_022708600
LinkDB
All DBs
Position
Unknown
AA seq
1454 aa
AA seq
DB search
MEESAAEFASSLRDLTTNSKPLISMLTMLADESREHAGKIVEAIEHYLRTSEPSIKLPSL
YLIDSIVKNIGNPYVQLFTENIVRNFVLVFQEGDERVRTALFKLRQTWKDIFPERKLYAL
DLNTQAVDPNWPVCAAAPIHVNPKFFKKPPSELEIARGTESELKSLDERQKQLDRIQEEL
RRKRDEIAHKSAAALKQAQQQSQTVQPKSPLSGQPTSPQVQQPPQIQVHAAQQNRGSKTI
TRGHPRTKQKDSLIGRPVHIEKANENVDFKDSESKKPKRFRDRDKIRKEAEKAHNAGVVV
NNNISTKDISPLAAMIGDPRRKQDEPHKVSSSKFRIPKKTSSSLTTARSGTEVLDEAKTW
PPDSGGGRAIARKTSHHSKRRSSPPAPPRNPPATGARLTLADKEAATILTGDVDLRLFEP
RAKRRKEETTSSVLSSAFPSSKEDTDLRIRPKGAISYPGQTPSPIVKGASPRENPATVHI
ASPTGTTAETATTTTTASVITSTASEIQKAQTNTSHSRTSSGHGSNRDPRSKKRMSPPVT
TSPIETTGNVSNAGIVKDAPSLNVENVHATPLDQSTAGNALSAEQLVREAERLLRGPSAT
AGGTRIALSGDVHAGFAPASHKRKPDRVNLRLLNSLQWSAPAPEFGQILLDRQMRDIRFV
DGVAVAVMEEAPPNLVKARLVCFRGNPRPVVINEHQFVMANFDGDDHEFTVNGNTHRVRF
GAPLRELYIDGVPYSCQFDGRPIKVQSGDDVFVVALPPPCPTVCDKRPAGPELLAKLGLR
PMHTLGSVPGHLGSAGPLGVSQGSPGVNGAADSGPTNSVRGVAGGWVRYQEEQPLPQVPP
PPSVRPIPSLFPPPMPPNIGCPLQGPPNRFPGGPPCPPSVPPGPMTTFHSHPAFGRPQMM
PPPPTAGPLDRLSGGSLPPPAPASFAQPQRMSPMNTQQITTPGSSSGQLDVSDLLSKLVE
QGLISNTSSSANDASANGNNKKERDKNIDGGDTTKDQPSGKEEIPQLNFKQPALLKQRIG
GVISALHEGVQCSACGQRFQQGDKSTSDKYAQHLDWHFRLKRRGREGLRKASSRKWFFCI
SDWIDFEEIEDLDERARNFFEEQLEVQHESNSQDGLALQSSVHELPSVEAAKLPKDVVYS
CEHCHESFEKYFCEDSEDWRLRNALLVDDKLFHPICHEDYLKPVPKPVLVPAAVSEDNNA
QPQSPGAEKCADLVETCVEASVPDPKRAAILDEGSQPLPGLDFDPSVEAADDPQAITKAE
ESALPDEEYQPVDVKIEEQSIEEKLCKEMEGDEANDMNRVEEQSVVVVEELGEFGVNSSA
SVSLVVDDKAELSLKAGEAATEGNSISSQTLNDESADLKEIEPPKEELKVIVKGSGGFVL
KVKQDSVVTVINADHAQSSSGDTKALDEPSLHETLDDDEHDTAGDWRPPSPDPRFKNLPP
LQKGSEMSGLCSIM
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atggaggaatctgcggcagagtttgcctcgtcacttcgggatctaacaactaattcgaag
cccctaatcagtatgctgacgatgttggcagatgaaagtcgggagcacgcgggaaaaatc
gttgaagccatcgaacattatttgcgcacgagtgaaccgtctattaagcttccgtcactc
tatttaatagactcgattgttaagaatatcgggaatccctacgttcaactgttcaccgaa
aacatagtgcgaaatttcgtactcgtctttcaagagggagacgaacgcgttcgaacggct
ttattcaaattgcgccaaacatggaaggacatttttccagaacgaaagttatacgctcta
gatttaaacacgcaagccgtcgatccgaactggccggtatgcgccgcagctcctattcac
gtgaatccaaagttcttcaagaaaccaccctctgagctggaaattgctcgtggcacggaa
tccgagctaaaaagcctggatgaaagacagaagcagcttgatcggattcaggaggagctg
cggcgtaaaagagatgagatcgcgcacaaatccgcagcagcattgaagcaagcccagcag
caatcacaaacagtacaaccaaagtctcccctaagtggacaacctacttcacctcaggtg
caacagcccccgcagatacaagtccatgctgcccaacaaaaccgagggagcaaaacaata
acacgaggccatccgcgaacgaagcagaaggactcactcataggacgaccagtacacata
gaaaaagcgaatgagaatgttgactttaaagatagtgaatcgaaaaaaccgaaacgtttt
cgtgatcgcgacaaaatccggaaggaagccgaaaaggctcacaacgcgggcgttgtcgtc
aacaacaatatcagtactaaagacataagtccactagcagcaatgattggtgatcctcgg
cgaaaacaagatgagccccacaaggtgtcttcttctaaatttcgaatacccaagaaaact
tcaagttcattaacaacagcccgtagtggaacagaagttctggatgaagctaaaacgtgg
ccgccggacagcggtgggggacgggccattgcgagaaaaacgtctcatcattcgaaaagg
cgttcttcgccacctgccccgccaagaaaccccccagctacaggagcccgtctcacactt
gctgacaaagaagcagcaacaatcctaacaggagatgtcgacctcaggcttttcgaacca
cgtgccaagcgacgaaaagaggaaaccacctcctccgtgttatcgtcagctttcccttcg
agtaaagaagacaccgatctcaggatcaggccgaaaggagcgatttcctatccgggacaa
acgccaagtccaattgtaaagggagcgagcccacgagaaaatcccgcgacggtacacatc
gcgtcgccaacgggcacaacggcggagacggcaacaacgacaacaacagcatcagtaatt
acttcgacagcatcagaaattcagaaggctcaaactaatacaagtcattcgcgaacttcg
agtggtcatggcagtaatagggatccgcgttcgaaaaagcgaatgtctcccccggtaact
acaagccccatagaaacaactgggaatgtttcaaacgcaggtatcgttaaagatgctccc
agtctaaatgtagaaaacgtacatgcaacacccctggaccaaagtactgctggaaatgct
ctatcagcagaacaactagtcagagaagcggaaaggctcctacgaggtccctcagcgact
gcaggtggaacacgaatcgcgctgtctggagatgtacatgcaggatttgctcccgcttca
cataaacgtaaacccgatagggttaacttaaggcttctcaacagtctccagtggtcagca
ccagcccccgaattcggccagatcttacttgaccgacaaatgagagacatccgtttcgtc
gatggagttgccgtcgcggttatggaagaggctcctccgaatctggtcaaagccagactt
gtctgttttcgaggcaatccgagacctgtcgtcatcaatgagcatcaatttgtcatggcc
aactttgacggcgacgaccacgagtttactgtgaacgggaacactcaccgcgtccggttt
ggcgctcctctaagagaattgtacattgacggcgtgccttattcgtgtcagtttgatgga
cggccaatcaaggtgcaaagtggggacgacgtttttgtggtggcattgcctccgccttgc
cctacggtttgtgacaaacgaccagctggccctgaattactcgcaaaacttggcttacgg
cctatgcacaccctaggttcggtgccaggacacctaggctccgcaggacctttaggggtg
tctcaagggtccccaggcgtaaatggggcagcggacagcgggcctacaaactccgtaaga
ggagtcgcagggggatgggtacgctatcaggaggaacaaccgctgccgcaggttcctccg
cccccttcagttcgccctattccgagtctctttcccccgcccatgccacccaacattggc
tgtccacttcaaggccctccaaacagatttcccggaggtccgccctgtccgccttcggta
ccaccgggtccgatgactacttttcactcgcatccagcatttggccgacctcaaatgatg
cctcctcctccgacagcaggtccgctagatcgtcttagcgggggttcgcttcctccacca
gcccccgcttcgttcgctcagccacaaagaatgtctcccatgaacacacaacagattaca
actccaggaagcagtagcggtcagcttgacgtttctgatctactgagcaaactcgtcgag
caaggacttattagcaacacgtcgtcaagtgccaatgatgcttcagccaatggaaataac
aagaaagaaagagataaaaatatcgacggaggcgatactacaaaggatcaaccttcggga
aaggaagagattccacaactgaacttcaagcagcccgcccttcttaaacagcggattgga
ggcgtcatttcggcactgcatgagggtgtccagtgttcggcttgcggccagcgtttccaa
caaggagataagagcactagtgacaaatatgcacagcatcttgattggcattttcgattg
aaaagacgtgggcgagaaggtttacgaaaagcaagcagtcgcaaatggtttttctgcatt
tcggattggattgattttgaggaaattgaagatcttgatgagcgtgcgaggaacttcttt
gaggaacaactggaagtacagcacgagagcaatagtcaggatgggttagctctccaatcc
tcagtccatgagctccccagtgtggaggctgccaagctcccaaaggacgttgtctattcg
tgcgagcactgccacgagtcgttcgagaaatatttctgcgaagattccgaggattggcgt
ttacggaacgctcttttagtcgacgataagttgtttcatcccatctgtcacgaggactac
ttgaagcctgtacccaagcccgtgctcgttccggctgccgtttctgaagacaacaatgcc
caaccgcagtccccaggtgctgagaaatgcgcagacttagttgagacatgcgttgaggca
tctgtaccagatcccaaacgggccgctattcttgacgaaggtagtcagccccttccgggt
ctcgatttcgatccctctgttgaagcagcggacgatcctcaagcaattacgaaagctgaa
gaaagtgccttgccggatgaagaataccagccagttgatgtcaagatcgaagagcagtcc
atagaagagaagctctgtaaggagatggaaggggacgaagctaatgatatgaatcgtgtc
gaagaacagtctgtcgtcgttgtggaagaattaggcgaatttggtgtaaacagcagcgcg
agcgtatcattagtagtagatgataaagcggaattatcgctaaaagctggtgaggcagca
acggagggcaactctatctccagccaaacgctaaacgatgaatcagcagatctgaaagaa
atagagcctccaaaagaggagctgaaggtcattgttaagggatctggtgggtttgtctta
aaggtgaaacaggatagtgttgtgaccgtgatcaacgccgaccacgcacagtcgagtagt
ggtgatacaaaggcattagacgaacccagtttgcacgaaaccctcgacgatgatgaacac
gacaccgctggagattggaggcccccttcacctgatcctcgctttaaaaatctaccgcct
ctacagaagggtagcgagatgagcggactttgcagtatcatgtga
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