Varroa jacobsoni: 111271907
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Entry
111271907 CDS
T07417
Name
(RefSeq) ATP-dependent RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vja
Varroa jacobsoni
Pathway
vja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111271907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111271907
03012 Translation factors [BR:
vja03012
]
111271907
Enzymes [BR:
vja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111271907
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111271907
Translation factors [BR:
vja03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111271907
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
DEAD
Helicase_C
OB_NTP_bind
HA2_N
nSTAND3
ATPase
AAA_22
AAA_19
ABC_tran
AAA_29
AAA_16
Motif
Other DBs
NCBI-GeneID:
111271907
NCBI-ProteinID:
XP_022708683
LinkDB
All DBs
Position
Unknown
AA seq
986 aa
AA seq
DB search
MSYREKGGRNAYDTGGRSSDARERIEGGGNSNMPPPGLRGREIGLWFARRNRERWKANNE
YQLIPRVHLESALQRKTENALVRVEEVLIRRNNSNWSDGHKRIVSACDGNKLGEVNALAP
RVKEPKRANCALGDVRRTLPVFSRRHDILRAINENQVCVISGETGSGKSTQVPQYIIEQC
EEQSAQKQRQNLHTEGTKGIQRTFVVCTQPRRISAISVAERVAKERGEVVGGHSVGYQIR
FENRAAPVTPDQPVILYCTTGIVFQYLQSDPMLSYVSHLIVDEVHERSLHSDLLLTIIKE
KILPNRPDFRLICMSATLDSNTFVEYFGPACVHLGISGRLYPVEDIYLEDYVLDLKPRCP
YGNSFESEKNWQAKRERRNQLLDYGYSRDIVSAILNVSLKTTLIDPEFVVAAVKWICKQA
NEENATREDPADSAILVFLPGWDVISDVCVALKNVDTTYLNRGNSLILPLHSMLPPSEQA
KVFLHPPRGVRKIILSTMIAEASVTIDDVVYVVDCGKTKLTTIEVDKNNQSRFGERWVSQ
ANAKQRMGRAGRVRPGKCYKLYTRMDYEAMDEFQQPEMARTRLENIVLYIKELQLGPPED
FLPKCITPPEREAVMNSVRFLEQIGALEPDNGGRITVLGKRICALSIEPRLAKLLLIACL
FGDKCLQPALSMAACLDFKDPFFTPMGEEHLVDKSRRNFAQMSGATLEFSDHVMLANAVQ
NSHQKSYYYLRENFLSSQTLKMIFISREQFQHQLSQLGVLPPAGSKGPGKTKVGQGTLRA
VICGGLYPGIARANFKLSDIPRLGPDQITLCKDNTLYSLSTETAHRAQFHPKSVLGKQRH
GLPSALFAHYLAQHSDTSRCVNLYEVTPVDHLPLLVFASAGECVYNSERETFKVNGWLEL
SCEPDLAHFIRRLRAAFNFAFETYLIAGSMSSDGPVRDEMSRCRDLLDALVVLFENTRSA
EMITKCVVPGAGDRTSANVDDDEDDA
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcgcgaaaaagggggcagaaatgcctatgatacgggtggccggtcttcagac
gcgcgtgagcgcattgaagggggcggaaacagtaatatgccaccgccgggacttcgaggc
cgagaaattggcttatggtttgctagaaggaacagagagcgttggaaagccaataatgag
tatcagcttattccacgagttcatctggaatcagcactacaacggaaaactgaaaacgcg
ctagtacgcgtggaagaagtcttaatacgtaggaataactcgaactggagtgatggccac
aaacggattgtgtcggcatgtgatggaaataagttaggagaagtaaatgccctagcgcca
agggtcaaagagccgaaaagggcaaattgcgccttgggagatgtccgacgaacactaccc
gtgtttagcagacgtcatgatatattgcgtgctattaatgagaaccaagtgtgtgtgatt
tccggagaaactggcagcggaaaatcgacacaggtacctcagtatattatcgagcagtgt
gaagagcagtctgcacaaaaacaacgacaaaatctccacacggagggcacgaaaggcata
cagcggacttttgttgtgtgcacacaacccaggagaatatctgctatctctgttgccgaa
agagtggcaaaagagcggggtgaagttgttggtggtcacagcgtgggttaccaaatccgt
tttgaaaatcgagcagcacccgtaaccccggatcagcctgtgatcctttactgcacaact
ggaatcgtttttcagtacctgcagagcgacccgatgttgtcatatgtaagtcaccttatt
gtcgatgaagttcacgaacgaagcttgcactcggatctccttttaaccatcatcaaggag
aaaattcttccaaaccgacccgattttcgtcttatctgcatgtcagcaactctggacagt
aacacatttgttgaatattttggtcccgcttgcgtacatttgggtatatcgggccgttta
tatcctgttgaagacatttatcttgaggattatgtcttagaccttaagcccagatgcccg
tatggtaattcatttgaatccgaaaagaattggcaagcaaagagagagaggcgtaaccag
cttttggattacggctattcaagggatatcgtttctgcaatcctcaatgtatctctaaag
accactctaattgatcccgagttcgtggttgctgccgtgaaatggatttgcaagcaagca
aatgaagagaatgcaactagagaagatcccgcagatagtgctatcctcgtattcttgccg
gggtgggacgttatctccgatgtttgcgtggctctcaagaatgttgacactacatacctt
aacagaggaaacagcttgatactacctctacactcaatgcttccgccgtccgaacaggca
aaggtttttctgcatcctccccgaggtgtcaggaagattatcctatcgactatgattgcc
gaagccagtgtcaccattgacgacgtcgtatacgttgttgattgtggaaaaacaaagcta
acgacaatagaggtggacaaaaacaatcaatctcgttttggcgagcgatgggtatctcag
gcaaatgctaaacagcgaatgggtcgagcaggtcgggtgcggcctggcaaatgctataaa
ctctacacccgaatggactatgaggcgatggacgaattccaacaacccgaaatggcccga
acgagactcgagaacatcgtattatacattaaagaacttcagctgggccctccagaagat
tttcttccaaagtgtattacaccgccagaacgcgaagctgtgatgaattctgttcgtttc
ctcgaacagattggtgcgctagaacccgacaacggaggccggataactgttcttggaaaa
cgtatatgcgctctatcgattgagccgcgcctggcaaaactgctattgatagcatgtctg
ttcggcgataaatgtcttcagcctgcgttgtcaatggctgcttgcctcgacttcaaggat
cctttcttcactcctatgggtgaagagcacctagtggacaaatctcgccgaaatttcgct
caaatgtcgggtgcaactctcgagttctcggatcacgttatgttagcaaatgctgttcag
aatagccatcaaaaaagctattactatctcagagagaatttcctctcttcacaaacactc
aagatgatctttataagccgtgaacaatttcaacatcaattatctcagctgggtgtgtta
cctccggcgggttcaaaaggtccaggcaaaaccaaagtaggacagggcactctgcgagca
gttatatgcggaggcctgtatcctggaatagctcgtgccaatttcaaattatcggacata
ccccgcctcggaccagaccagataaccctctgcaaagataacacattatactctctatcc
acagaaacggcgcatagagcccagttccatcccaaaagcgttcttggcaaacagcgacac
ggactgccttctgcattattcgcccattatctagcccagcattctgatacatcacgttgc
gtcaatctttatgaggtcacacctgttgaccatttaccgctgctggtgtttgcctcagca
ggagagtgtgtctacaattctgaacgtgaaacattcaaagttaacgggtggctggaacta
agctgcgaaccagaccttgcccacttcattaggcgactaagagctgcttttaactttgcg
tttgagacctatcttattgcgggatcaatgtcctcagacgggcctgtccgggacgaaatg
tcccgttgtcgcgacctattggatgctctcgtggtcctgtttgagaatacgcgtagtgct
gaaatgatcacaaaatgcgtcgtgccaggtgcaggcgatagaaccagcgctaatgttgat
gatgatgaggacgatgcgtaa
DBGET
integrated database retrieval system
