Varroa jacobsoni: 111271970
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Entry
111271970 CDS
T07417
Name
(RefSeq) endoribonuclease Dicer-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
vja
Varroa jacobsoni
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vja03036
]
111271970
Chromosome and associated proteins [BR:
vja03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111271970
microRNA pathway
RISC loading complex
111271970
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
DEAD
Ribonucleas_3_3
ResIII
Helicase_C
Dicer_platform
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
111271970
NCBI-ProteinID:
XP_022708787
LinkDB
All DBs
Position
Unknown
AA seq
1640 aa
AA seq
DB search
MKYPLTQRSAADPEMAATNRRLEADQARSYQLEMFEFAKKHNTIVVLGTGTGKTFISVLL
IKHFEHQVAGKWSAGPENLGSKRTIFLAPTVPLVEQQASVLKQHLSVEVGHFVGAMQVDL
WSSEEWNNNFEKYGVLVMTPGVFKNVLLHGFMSLESVNVLIFDECHRATGDDPYVGIMKI
YKEIPAESRPLILGLTASVINAQVREGIKVCKLIRELEATLFARAKTVTGTDVFGTKPHE
IVAVFENHSPDSNLHVDQDLVNSMEDCADFKEFRRTITGLNQLYEACGSFCTKQLLKFRE
KELEKALVAPDCPPDFKTHAPTKKKIFRQIYSFLGNDDPLDLPAKMRRLLDILSEFRDLD
NSATSNEANEGGPGPLCAIVFVKERMTAYVLYRWMNELSKNSLYSFINSSFIVGQNQNPF
KNDGNHESFQMNAKAQRKVMADFREGIYNLIFATSVIEEGMDVPVCNLIVRFDLPPDVRS
YTQSKGRARAKPSLYVVLTDERSQRNTENLINSFQETEFLVMRACEKQRRAPDLLESIKV
LEDDPDLPDYIVGAARISAQSAVSLLYRYCQGFASEPYADVLPSFTFEETTDGFLCTLML
PLISPLWRERITNPQPFESKNKARVFVALEMCRRLHKAGELTDRLLPRPRIERLHRLKLT
ASDEKAQKELQKVQIKTGSSARRYVFPRAQASALHNLEEGVDEKPPELDKYHLYAICTHV
VKWASDKQNWRGDMTLFDPQQHPTWMGLVLREKLPDNLPKFPIYTRSGEEEVEVIYSGTI
SLSPEDKLLCHRFNRYIFSIVLDIKDNSMRQCVGFITPCVVAVYNTSHKKFILNKDVMCS
VGPARPPQKERFEFDEDMYKDAVVELLYHINENLPKHNPEVHSRVPWDEYHRYYVRSTRA
LGEDGKPLTPHTTGYYSFSLQLSFAQYVSQRTVRTNRNNITNDDQPLLEVEHVQKRLEMT
IPRFADRAGTHFAARDINNDRGSSKVYVLPEFVAVHALKASVWRKATSLPSILHRLNRLA
VADDLLVRIINQAGLGRPLRCGESWEPLRFESLAGDKSVQTGFREFGRLMASESREFDEQ
KLLAGMQLLEQPDLTTCLGPSPGDIMKALSTKHAHDLFDMERLELLGDAFLQIAATFALI
DRHAMETTRELAVLRQYQVCNQHLLYRALEHNLTSLVNTVPFHARRCFLPPGFQVWPHEE
RLLEPDFLRVFLGTYGYEYNGELMLKDMRFAMYYDKLLEQIQQMSEEEFLIELNQNFLQD
RFLPDRNTLLVKGFQSYKPKVAGDVVEALIGLYVEKCGPVGGLKLLNFFGLDFGNTHTLN
FIDAFKLNIAPGKDTIEPNDFTPFQHHINRIENILGYVFQNKVLALQAITHPSCQAHRLT
DTNCRLAFLGEGLLDFLITVYIYRMNLKLDQGQLTDLRAALTNSQILAHAVVKNKLHSSL
LYANNKLWTAIRKYIDNIEEIGLRLNTVLGDWETEDLEEASVPRSLSRILEALLAAVFLD
SDKSLEQVWKIIVKIMGYEISVFSKHIPISPIREVCTKFPGTSFKKRDIPADEDEDMVEV
TMYVKLKDGTIEEYTQQAETKKLAKTILAKKYLRRLEKEELLAEIERRKREGEDTEVVRI
LEDALLGSELIKSKYYHKKK
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatccgttgacacagagaagtgctgcagatcccgagatggcagccacgaatcgt
cgcctggaagcagaccaggctcgttcctaccagttggagatgttcgagttcgccaagaaa
cacaacaccattgtagtcttaggcaccggaacgggaaaaacgttcatctctgtgctgctt
atcaagcacttcgaacatcaggtggcaggtaaatggtcggctggacctgaaaatcttggc
agcaaacgtacgatctttttggctcccaccgtccctttagtggaacagcaggcctctgtt
cttaaacaacatctctcagttgaagtcggccactttgtaggcgctatgcaggttgatctt
tggtcatcagaggagtggaacaataatttcgagaaatacggagtgctcgtaatgacccca
ggagtgttcaaaaacgtgttacttcatggattcatgtcgcttgaaagcgtaaatgtgctt
attttcgacgaatgccatcgtgctaccggagatgacccgtatgtagggataatgaaaata
tacaaagagatacctgctgagtcacgtcctcttatactaggtcttactgcttctgtcatc
aatgcacaggtacgagaagggataaaagtgtgcaaactaattcgtgagctcgaggctact
ttatttgctagagccaaaacggtcactggcacggacgtatttggaactaaaccacatgaa
attgttgcagtctttgagaaccacagtccagacagcaatttgcacgtcgatcaggacttg
gtgaattcaatggaagattgcgcagatttcaaggaattccgtagaacgataaccggcttg
aatcagctctatgaagcttgcggctctttttgtaccaaacagctattaaaatttcgtgag
aaagaattggaaaaggccttagtagcacccgattgtccgcctgatttcaagacgcatgcc
cccacgaagaaaaaaatcttccgccaaatctacagctttttgggcaacgatgatccgttg
gatttgccagcaaaaatgagacggttacttgatatcttgagtgaatttcgtgaccttgac
aattccgcaactagcaatgaagctaatgaaggcgggccagggcctttgtgtgcaattgtg
tttgtaaaagaacgtatgacagcatacgtgctctatcgatggatgaatgagctctccaaa
aactcgttatacagtttcatcaacagttcattcattgttgggcaaaaccagaacccattt
aaaaacgatggcaaccacgaatcgttccaaatgaacgcaaaggcacaacgcaaagtaatg
gctgactttcgcgagggtatttacaacctgatattcgccacgtcagtcatcgaggagggc
atggacgtaccagtgtgtaacctcatagtccggtttgatttgccaccagatgtccgctca
tatacccagtcgaagggtcgcgcccgtgccaagccttcactgtacgttgtactcacagac
gaacgaagccaacgtaacaccgagaaccttataaacagttttcaggagactgagttcctg
gtaatgcgagcgtgtgaaaaacagcgtcgtgcccctgatttgctcgaaagtattaaggtg
ctagaagatgatcctgatctaccagattacattgttggcgcagctcgtatttcagcacaa
agtgctgtaagtttgttgtatcggtattgccaaggatttgcatcagaaccgtatgccgac
gtgcttcctagcttcacgtttgaagagacaactgatggcttcctctgtactctgatgttg
ccactgatttcaccactttggcgagagcgtattacaaatccacaaccttttgaaagtaaa
aacaaagcgcgcgtgtttgtagcccttgaaatgtgtcgacgtttgcataaagcaggcgaa
cttaccgatcgcctgcttcctcgtccacgtattgaaaggttgcataggttaaagcttact
gcaagcgatgaaaaggcccagaaagagctgcaaaaggtccagattaaaacgggaagtagt
gctcgtcgttacgtgtttccccgtgcacaggcctcagcattacacaacttggaagaaggt
gtagatgagaagcctccggaattggacaagtaccacctttacgccatatgtacgcatgtc
gtgaagtgggcatcggacaagcaaaactggaggggcgatatgaccttgttcgacccccag
caacaccctacatggatggggcttgttctcagagagaagctgcccgacaatcttccaaaa
ttcccgatttacactcgatctggagaagaagaggtggaggtgatttattcggggacaata
tcactttctcccgaggacaaactgttgtgccaccgcttcaaccgctacattttctctata
gtccttgatattaaagacaattctatgcgtcagtgcgtcggatttattacgccgtgcgtc
gttgccgtatacaacacaagccataaaaaattcattctaaacaaagacgtcatgtgctct
gtgggcccagcgaggcctccccaaaaagaacggttcgaatttgatgaggacatgtacaag
gacgccgttgtggagttgctctatcacatcaacgagaaccttccaaaacacaatccagag
gttcactcccgtgttccgtgggacgaataccatcggtactacgttcgctcgacgcgggcc
ttaggcgaagatggaaaaccccttactcctcatacaacaggatattatagtttcagcctg
caattaagtttcgctcagtatgtgagccagaggaccgtgcgaacgaaccgcaataacata
acaaacgatgaccagccactactcgaagtggagcatgttcagaaacgactggagatgaca
attccacggtttgccgaccgcgctgggacccatttcgctgcacgtgatatcaataacgat
cgtggcagtagcaaggtttacgttctgccagagttcgtagctgtacacgcgctaaaagcc
agtgtatggcgtaaagccacctcgcttccgtctattctgcatcgactgaataggctagcc
gtcgctgatgatctattggtgcgcattattaatcaagctggactaggccgtcccctgcgt
tgtggagaaagttgggagcctctacggtttgagagtcttgcaggtgataaatcggttcaa
acgggctttcgagagtttggccgtctcatggcgagtgagtcgcgtgaattcgatgagcag
aagcttttagcaggcatgcaacttttagagcagccagacttaaccacctgtttgggtcca
tctccgggcgatattatgaaggccctttctacaaagcacgcgcacgacctattcgacatg
gaacgtctggaactgttgggtgatgccttcctacagatagcagctacttttgctttgatt
gaccgccacgcaatggagacaactcgcgaacttgctgttcttcgtcagtaccaagtgtgc
aaccagcatttactttaccgggctctcgaacataaccttacaagtctcgtaaacacagta
ccattccatgcccgacgctgttttcttcctccgggctttcaggtatggccccacgaagaa
cgattacttgagcccgatttcctccgtgtctttcttggaacgtacggttacgaatacaac
ggtgaactaatgctaaaggacatgcgctttgctatgtattacgacaaactgctcgaacaa
atacagcaaatgtcagaggaggaatttctcatagagttaaaccagaacttccttcaagat
cggtttctccctgatagaaacacccttctcgtaaagggtttccagagctacaaacctaag
gtggctggtgatgtggtagaggcgctgatcggtctttacgtggaaaagtgcggtcctgtg
ggtggtcttaaattgcttaacttttttggtctcgacttcggcaacacccacactctaaac
tttattgatgcgtttaagttaaacatagcacctggcaaagacaccattgagcccaatgat
ttcactccatttcagcatcacataaatcgtatcgaaaatatactgggatacgtatttcaa
aacaaggttcttgccttacaagctatcacgcatccgtcatgtcaagcgcaccgtctgact
gacacaaattgccggttggcgttcctaggtgaaggactgcttgattttctcattaccgta
tatatttatcgtatgaacttaaaacttgaccaaggacaattgactgatttacgagcggct
ctgactaatagccaaatcttggcccatgcagttgttaagaacaagctacattcttcgcta
ttgtatgccaataacaaattatggacagcgatcaggaaatatattgataatatcgaggaa
atcggattgcgactgaatacggtgctaggcgactgggagacagaggatcttgaagaggcc
agtgtaccgcgatctctttctcgtattttggaggctcttcttgctgctgtatttttggat
tcagataaatccttagaacaagtttggaagattatcgtcaaaataatgggatatgaaatt
tctgtgttctctaaacacataccgatctcacctattcgggaggtttgcacgaaatttccg
ggtacatcgttcaaaaagcgtgacatacctgctgacgaagacgaggatatggtggaagtt
acaatgtacgtaaagctgaaggatggtaccatagaagagtacacccagcaagccgaaacg
aaaaagctagcgaagacgatccttgctaagaaatatcttagacgactagagaaagaagag
ctactagctgagattgaacgccgcaaaagagagggtgaggacacagaagttgtgcgcatt
cttgaagacgccctgttagggtcagaacttataaaatctaaatactatcacaaaaaaaaa
taa
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