Varroa jacobsoni: 111272334
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Entry
111272334 CDS
T07417
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
vja
Varroa jacobsoni
Pathway
vja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111272334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111272334
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111272334
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML
Beta-prop_IFT140_1st
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
ASA1
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
CFAP251_N
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_WDR11_2nd
PEP5_VPS11_N
Beta-prop_SPT8
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
111272334
NCBI-ProteinID:
XP_022709477
LinkDB
All DBs
Position
Unknown
AA seq
825 aa
AA seq
DB search
MSVQTQIYAKPRHQFMPSWVPRNQHGHHGHRGHHHSNSHGGYHGNREHHGGGIGKQLGGP
HGANAAIAASALPAEFDGKRLRKAVARKTVDYNASLSDWIMSRVWQRDHRDAPAPQPDPS
YQLQLPPPVGLLHSPVNVVTTKFVRAATNKMKCPVFCVTWTPEGRRLITGASSGEFTLWN
GLTFNFETILQAHDLPVRCMTWSRGDQWMVTGDHGGYIKYWQSNMNNVRMFQGHKEAVRG
ISFCPTDAKFSSCSDDGTVRVWDFQRCFEERILRGHGSDVKCVDWHPQKALIVSGSKDSQ
QPVKLWCPKVGRSVATLHAHKSTVMDARWNRNGHWLLTASRDHLIKLFDVRKLNVELQTF
RGHKREACTLAWHPVHEEIFASGGSDGAVMFWAVGSDKELGGMEQAHESCVWSLAWHPVG
HILCTGSNDHTSKFWTRNRPGDKMRDRYNLNTLPRGGNAMAGDEDDEDGGGRAQSAPEPN
IPGMGIDAEQLQRLKEGSIPGLDDDKPQKKTPHSKPIHKGFQQQWLENRAPVVFQQTGDE
QPPTDGQAPPNNISAPSNSHNNTNASSNNSNNNSNNNNNSSNNGHTNSHPMIVPPQQFGH
PGMPPHGGPPSHALPGWPEAGPPPGMNMPPGPPGQHHPSYGPPPPGHMHMGMPQGFMGGP
QQGQQQFPGGPPHHGGPHPQMNWMGQPQGPPQGHPGPHGAPQAHPDQGSWPHTPGPPGMN
DGHWGPMGSTDGNGLMGGGSGGNDWLRGSHGPPPPPPPPGNQWGQPPGAPGPGGPMWPRA
RGRGAGPMQGGRGPPHNPISGGAPQHGAGGPHHWPGPNAGGGTWR
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttcaaactcaaatatacgccaaaccccgtcaccagtttatgcccagctgggtc
ccacgaaatcaacacggtcaccatggtcatcgcgggcatcaccacagcaatagccatggt
ggttatcacggaaacagagaacaccatggtggtggcataggaaaacagctcggtggacca
cacggagcaaatgctgcaatcgccgcgtctgctctgccggctgagtttgatggcaagcgg
ttgagaaaagccgtggcgcgaaaaaccgtcgactacaatgccagcctttcggactggatt
atgtcccgggtatggcagcgagatcatcgagacgcaccagctccacagcctgacccatcg
taccaactacagttacctcctccggttggattacttcactcacctgttaacgtcgtcaca
acaaaatttgttcgcgctgcgacaaataaaatgaaatgtcctgtcttctgtgtcacttgg
actccagagggccggcggttaattaccggtgcttccagtggagaatttactttatggaat
ggtctaacctttaattttgagaccattttacaggcgcacgaccttcctgttcgttgtatg
acttggagccgaggggaccaatggatggtaacaggagatcatggcggttatatcaagtat
tggcagagcaacatgaataacgtccgcatgttccaaggacacaaggaagccgtcagaggc
atcagcttttgtccaacagatgcgaagttcagctcatgttcggatgatggtaccgttcga
gtgtgggatttccagagatgttttgaagagagaattctcagaggtcatggaagtgatgtc
aaatgtgttgactggcaccctcagaaggccctgatcgtgtcgggttcgaaagattcccaa
cagcccgttaaactttggtgtccgaaggttggccgtagtgtagccacgcttcatgcgcat
aaatctactgtcatggatgcccggtggaaccgaaacggccattggttactaacagcgtca
cgtgatcacctcatcaaactcttcgatgtccgaaaactcaatgttgaacttcaaacgttt
cgtggacacaaacgggaagcatgcactcttgcttggcatcctgtgcacgaagagattttc
gctagcggtggttctgacggcgcagttatgttctgggctgttggcagtgacaaggaactg
ggcggaatggaacaggcccatgaatcgtgtgtatggtcactcgcgtggcatcctgtcggt
catatcctctgcacgggttccaacgaccatacaagtaaattttggacgagaaaccgacca
ggcgataaaatgcgtgaccgatacaacctgaatactttgcctagaggaggcaacgcaatg
gctggtgacgaggacgatgaagacggtgggggtcgagctcaatccgctcccgaaccgaac
attcccggaatgggtattgacgccgaacagctacaaagactcaaggaggggtccatccct
ggactggacgatgacaagcctcaaaagaaaacaccacattcgaaacctattcacaaagga
tttcagcaacagtggttggaaaatagagcaccggtcgtctttcaacaaacgggtgacgaa
cagccgcctactgacggacaggccccaccgaacaacatttccgcccccagcaacagccac
aacaataccaatgcgtcaagcaacaatagcaataacaatagcaacaataacaataatagt
agtaataatggccacacaaatagccatccgatgatagtaccaccgcagcagtttggtcat
ccaggaatgccgccccacggggggccgccttcacacgctttgccgggctggcctgaagca
ggaccgccgcctggcatgaacatgccaccaggaccacctggtcaacaccatcctagttat
gggccaccacctccgggtcatatgcatatgggcatgccgcaaggttttatggggggtcca
cagcagggtcaacaacagttcccaggtggtccgccacatcatggcggaccacatccacaa
atgaactggatgggtcaaccacaagggccaccccaaggacatcctggcccacatggagca
cctcaagctcatcctgatcaaggatcgtggccgcatactccagggccaccaggcatgaac
gacggacattggggtccaatgggcagcactgacggaaatggcctaatggggggaggtagt
ggtgggaatgattggttacgaggcagtcatggacccccccctccaccgccaccacctggc
aaccaatggggccaaccacctggagcacctggtcccggaggaccgatgtggccgcgagca
cgaggccgcggggccggtcctatgcaaggcggtcgcggaccgccccataatccaataagt
ggaggagctcctcaacatggcgccggtgggccgcaccattggccaggaccaaacgctggc
ggtggaacgtggagataa
DBGET
integrated database retrieval system
