Vibrio japonicus: NP165_00420
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Entry
NP165_00420 CDS
T08510
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vjp
Vibrio japonicus
Pathway
vjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NP165_00420 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vjp03019
]
NP165_00420 (rhlB)
Enzymes [BR:
vjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NP165_00420 (rhlB)
Messenger RNA biogenesis [BR:
vjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NP165_00420 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UUM30691
UniProt:
A0ABY5LFS7
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All DBs
Position
1:complement(91289..92590)
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AA seq
433 aa
AA seq
DB search
MKKTHITEQKFADLGLHAQVTEGLIKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLTATFNHLLNTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAAPLIESTGIKAALAYG
GESYDKQLAKLEQGVDVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSN
EHKMALLQTLIEEEWPDRAIIFANTKHKCDSVWGHLAADGHRVGLLTGDVPQKKRERILD
QFTKGEVDILVATDVAARGLHIPQVTHVYNYDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEDYAINLPAIEEYIEHAIPVSDYDPSALIEDLPAPIRMRSNRPQQRRTNTGGSRSNNRR
QNTRSRPRQQKDS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgatttgggattgcatgcccaagtt
actgaaggtttgattaaaaaagggttcgaattttgtaccccaattcaagccttggcgttg
ccggtactgctcaccggccaagacattgcaggtcaggctcaaacagggacaggtaaaacc
ctggctttcttgactgctacttttaaccacctactgaatacgcctgaacatgaaggccgt
aaaccaactcagccgcgtgccatcatcatggcccctacgcgtgagttagctattcagatc
tacaacgacgcagcgcctctaatcgaaagcacaggtattaaagccgcacttgcttacggc
ggagaaagctacgacaaacagcttgccaaactagagcaaggtgttgacgttttgatcggt
acgactggccgaatcattgacttctacaagcaacgagtgttcaacctaaaccacattcaa
gcagtagtattagacgaagcggatcgcatgtttgaccttggctttattaaggacattcgt
ttcctattccgccgtatgcctgaaccaaaagagcgtttgaacatgctgttttctgcgacg
ctgtcttaccgcgtacaagagctggcgttcgagcacatgcataatccagagcacgtggta
gtagagcctgaacagaaaaccggtcaccgtatccaagaagagctgttctacccatccaac
gaacacaaaatggcgctgcttcaaactctgattgaagaagaatggccagaccgtgcaatt
attttcgctaacaccaagcacaagtgtgattcggtttggggacatttagctgcagatggt
catcgtgttggtctactaacgggtgatgtaccgcagaagaaacgtgaacgcattctggat
caattcactaaaggtgaagtggatattctggttgcgaccgacgttgctgcccgtggtctg
cacattccacaagtgacacacgtttataactacgatttaccagacgattgtgaggactac
gtacaccgtattggtcgtacaggtcgtgctggtgcaagcggtcactcgattagctttgct
tgtgaagattacgcaatcaacttgccagcaatcgaagagtatatagaacacgcgattcca
gtttctgattacgacccaagcgcgctgattgaagatcttccagctccaattcgtatgcgt
tctaatcgtccgcaacagcgccgtactaatactggtggttcacgttcaaacaaccgtcgc
caaaacactcgctctcgtccgcgtcaacagaaggattcttaa
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