Vibrio japonicus: NP165_01715
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Entry
NP165_01715 CDS
T08510
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
vjp
Vibrio japonicus
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vjp03019
]
NP165_01715 (csrD)
Messenger RNA biogenesis [BR:
vjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NP165_01715 (csrD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
UUM30901
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All DBs
Position
1:341097..343106
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AA seq
669 aa
AA seq
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MRYTPTLKLSTRLVAFVTVIVVSAIFILFIGGTLSFKRLGHEYLEHSLSGIVTVVDKEME
DPDAAYSLQYWMPKMLQASSVVEMELVSSYGTIYRFKDTASKVAPSLLYQTEYVLERNQG
YRIRFKAVPPYIGFGYSMQALWSITLAIVLIIFCLIQGVKWLKKQLHGSELLEERGRMIL
AGRVEEYAKGDEKEWPFTASEALDRLIEELQDARQERSRFDTFIRTQTFLDQLTGTANRV
LFDSKLEAALSENGSHGGVLLIRIDDWEQIQEECGKKDANDFIIEVGQALSNVIQRYQDV
ILARYYSSDFAILAPSLGSKEVSTIAMQCLKQLSRITPPNLLDEENWVHIGVSIYREGER
QGKIIDEAETALKSAQLQRINTWNRFKKNIDLDVERGSVRWRTLFDQVITPDKLLIFAQP
CYLLNNQQEHQLDHYELFARIHDPEKGVIKASRFNSAIESIGYEALLDRAVIRSVFRYLK
VSPCSVCYSINLHVVPFADRSYFKWFRDELLQLTAEQRSKLSFEFVEARLVKHLDYMRPV
IKMTAGLGCKVVVGQAGRSIVSTHYLKELPISFLKLHRSLIKQIDQRHENQLFVRSLLGA
CDGLMTQVIALGVDTKQEYDTVLQLSVNGVQGRYFEEEQQILPLPSSRPKDVEHKKVQIG
RRNRWRKSK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaggtatacccctaccttaaaactgagcaccagattggttgcttttgtcacggtgatt
gtcgttagtgccatcttcattctatttattggtgggactctttcttttaaacgtctaggt
catgagtatttggaacactctttatcagggatagtgactgttgttgataaagagatggaa
gatcctgatgcggcttactccctacaatattggatgccaaagatgctacaagcatcgagt
gtggtagaaatggagttagtctcctcttacggcactatctatcgctttaaggataccgct
tcaaaagtcgccccctctcttctctatcaaaccgagtacgttttagaaagaaatcaaggt
taccgtattcgttttaaagcggttccgccatacataggtttcgggtattcgatgcaagcg
ttatggtctatcacgcttgccattgtgttgatcatcttttgtcttattcaaggcgtaaaa
tggctgaaaaagcagttacatggttcggagttactcgaagagcgaggacggatgattctg
gccggaagagtcgaagagtacgccaaaggtgacgaaaaagagtggccatttaccgcgagt
gaagcgctcgatcgcttgattgaagagttacaagatgcccgtcaggagcgaagccgattt
gatacgtttatccgcactcaaacctttttagatcagttgacaggaacagcgaatcgcgtg
ctgtttgacagcaaattagaagcggcactatcagagaatggttctcatggcggcgtgtta
ttgatccgcattgatgattgggaacaaattcaagaagagtgcggtaaaaaagatgccaat
gatttcatcatcgaagtcggtcaggcactgagcaatgtcattcagcgatatcaagatgtg
attttggctcgttactacagttctgatttcgcgattttagcgccgagtcttgggagcaaa
gaagtatcaaccatcgccatgcagtgtttaaaacagctttctcgcatcacacctcctaac
ttgttggatgaggagaactgggtgcacatcggagtcagtatttaccgtgaaggtgagcga
caaggaaaaatcatagacgaagcagaaacggcactgaaaagtgcgcagctgcaaagaatc
aatacatggaaccgtttcaagaaaaacatcgatttggacgtggagcggggcagtgttcgt
tggcgaactttgttcgatcaggtcattacgcctgataagttacttatctttgcacaacct
tgttacctgttaaataaccagcaagaacatcagcttgatcactatgagttgtttgcgcga
attcatgatccagaaaaaggcgtcattaaggcttctcgttttaactctgcgattgaatca
ataggttacgaagcgctgttagatagagcggtgatccgctcggtttttcggtatttgaaa
gtgtcgccctgttctgtgtgttattctatcaaccttcatgtggttccttttgccgatcga
agctactttaagtggtttcgagatgaattgctgcagcttactgctgagcagaggagcaaa
ctgagctttgaatttgtggaagcaaggttggtgaagcatttagactatatgcgacctgtc
atcaagatgacggcgggtttagggtgcaaagttgtcgttggtcaagcaggccggtccatc
gtaagcactcattatctgaaagagctgcccatcagttttcttaagttgcaccgtagcctg
atcaagcaaatcgatcagcgtcacgagaatcagctgtttgttcgcagccttttaggtgct
tgtgatgggctgatgactcaggtcatcgcgctgggtgtcgacacaaaacaagaatatgac
accgttctgcagttgagtgttaatggtgttcaggggcggtattttgaagaagagcagcaa
atacttcctttgccgtcatctcgccctaaagacgtggaacataaaaaagtacaaattggt
cgtagaaatcgttggcgaaaaagtaagtaa
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