Vibrio japonicus: NP165_01905
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Entry
NP165_01905 CDS
T08510
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vjp
Vibrio japonicus
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vjp03021
]
NP165_01905 (rapA)
Transcription machinery [BR:
vjp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
NP165_01905 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Helicase_C_2
AAA_34
Nuo178_helical
STB2_C
Motif
Other DBs
NCBI-ProteinID:
UUM30939
UniProt:
A0ABY5LFX6
LinkDB
All DBs
Position
1:384902..387811
Genome browser
AA seq
969 aa
AA seq
DB search
MTFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYARSDAPVTRVTFNSGDV
IDCQEGWSLKVDQVLEDQGLFTYIGTREDTGEEEVVLREIMLSNQIRFNKPQDKLFAGQI
DRMDNFVLRYRALLNQYEQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLAGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVESYA
DSENPFDTQQYVLCSLDFLRKSRKRFEQALEGEWDLLVVDEAHHLEWSPEKPSREYQVIE
GLAENTPGVLLLTATPEQLGRESHFARLRLLDSDRFFDYEEFVKEEEQYAPVADSVSALF
SGHKLENDAKNQITELLSEQDVEPLFRIIESNSDEEEKAAARQELIDNLMDRHGTGRVLF
RNTRAAIKGFPARNVNLIPMPIPQQYTTSMRVSGMIGGKMTPEARAMKNLYPEEIFQEFE
GEDSSWWQFDSRVNWLLEKITDKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM
SILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQNRDVDIHVPYLQGTSQAILARWFDEGLNAFAETCPTGRSVYDRFSEQLIGMLASGD
VTELDEVIVESAAMNKELKAQLEQGRDRLLEMHSNGGEKAQAIVEKIAATDGDTNLVTFA
LSLFDTIGLNQDDKGENALVVTPSEHMMVPSYPGLPYEGATITFDRDTALSREDMHFISW
EHPMIQGGIDLLMSEGVGTTAVSLLKNKALPVGTMLLELVYKVDAQAPKRSGISRFLPTT
PIRLMLDGKGNDLSAQVEFDSFNRQLSPVGRHIATKLVASVQAQVHQMITAGDKLVVEKV
AAIREQAQKEMQSSLNAELERLQALKAVNPNIRDEEIEAIDEQIKELTGYIGQAQYQLDS
LRMIVVSHN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgctttgggccagcgctggattagcgatacagagagcgatctaggtttagga
accgttgttgcattggacgcgcgtactgtgactttaatgtttgcagcttctgaagaaaac
cgagtgtacgctcgaagtgatgcaccagtaacccgagtgacttttaatagtggtgacgtg
attgattgccaggaaggctggtcattaaaagtagatcaagtgctcgaagatcaaggtcta
tttacttacatcggtacgcgtgaagatacaggcgaagaagaggttgtactgcgtgagatc
atgctgagtaaccaaatccgattcaacaagcctcaggataagctgttcgcgggtcaaatc
gatcgtatggacaactttgttctgcgttaccgcgctttgctgaaccagtatgaacagcac
aagagcccaatgcgcggactttgtggcatgcgtgctggcctcattcctcatcagctatat
atcgcgcacgaagtgggtcgtagacacgcaccacgtgtattacttgccgatgaagtggga
ctgggtaagaccatcgaagcgggtatgatcattcaccagcaggtgttagcgggtcgtgct
gaacgcattttaattgtggtaccagaaacattgcagcatcagtggctcgttgagatgatg
cgtcgatttaacctgcatttttctatctttgacgaagagcgttgcgttgagtcgtatgcc
gattcagagaacccatttgatacgcaacaatacgtattatgttctctggactttttacgt
aagagtcgaaaacgctttgaacaagcgctggaaggcgagtgggatctgttggttgtcgat
gaagcgcaccacttagagtggagccctgaaaaaccaagccgcgaataccaagtgattgaa
ggcttggcggaaaacacgccaggcgtacttttgttaacggcaacgccagaacaacttggt
cgtgaaagtcacttcgctcgtttgcgtctactcgattctgaccgcttttttgattacgaa
gagttcgttaaagaagaagagcaatacgcgccagttgcggattctgtgagtgcgcttttc
tctggtcataaacttgaaaacgacgctaaaaaccagattaccgaactgctttctgagcaa
gatgtcgagccgctattccgcattattgaaagcaatagcgatgaagaagaaaaagcggct
gcgcgtcaagagttgattgacaacctaatggatcgccacggtacaggacgcgttttgttc
cgtaatacgcgtgcggctatcaaaggcttccctgcgcgtaatgtgaatctaattccaatg
ccaatcccgcagcagtacaccacctcgatgcgtgtatcaggcatgattggcggtaagatg
acgccagaagcgcgtgcgatgaaaaatctttatccagaagagatcttccaagagtttgaa
ggtgaagattcaagctggtggcagttcgatagccgtgttaactggctacttgaaaagatc
accgacaagcgcagtgagaagatcttagtgatcgcttcacgtgccagtaccgcgctgcaa
cttgaacaggctctgcgtgagcgtgaaggtatccgcgcgacggtattccacgagggtatg
tccattcttgagcgtgataaagctgcggcttactttgcgcaggaagagggcggtgctcag
gttctgatttgtagtgaaattggctcagaaggccgtaacttccagtttgcaaaccagctt
gtgatgttcgacttgccgttcaacccagatttgttggaacagcgtattggccgtttggac
cgtattggtcagaaccgcgatgtcgatatccatgtgccgtacctgcaaggtacttcgcag
gcgattttagcgcgctggtttgatgaaggcttaaatgcgtttgcggaaacctgtccaaca
ggtcgttctgtgtatgaccgattctcagagcaactgatcggcatgctggcgtctggcgat
gtgacagagcttgatgaagtgattgtagaatcagcagccatgaacaaagagctcaaagcg
cagctagaacaaggtcgtgaccgtctgttggaaatgcactccaatggcggcgagaaagcg
caggcaatcgtcgagaagattgcggcaactgatggcgatacaaacttggtgactttcgcg
ctaagcctgtttgacaccattggcttaaaccaagatgacaaaggtgaaaatgcgctggta
gtgacaccgtctgaacacatgatggtgccaagctacccagggcttccatacgaaggcgca
acgattacgtttgaccgtgataccgctctttcgcgtgaagacatgcactttatcagctgg
gaacacccaatgatccaaggtggtattgatcttctgatgagtgaaggtgtcggtacaacg
gccgtttcgctgctaaagaacaaagcattgccagtaggtactatgctgcttgagcttgtc
tacaaagtggacgcgcaagcaccgaagcgcagtgggattagccgcttcttgccaaccacg
ccaattcgtctgatgttagatggcaaaggcaatgatctttcagcgcaagttgagtttgac
agctttaaccgtcagctaagcccggtaggtcgtcacatcgcgacgaaactggttgcttcg
gttcaggcacaagttcatcaaatgattaccgcaggtgataagctggttgttgagaaagtg
gcggcgattcgtgaacaggcgcaaaaagagatgcaatctagcctgaacgctgagcttgaa
cgtctacaagcactgaaggcggtaaacccgaacatccgtgacgaagaaattgaagcgatt
gacgagcagatcaaagagctgactggctacatcggccaagctcagtaccagcttgattcg
ctacgtatgatcgtagtctcgcacaactaa
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