Vibrio japonicus: NP165_04575
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Entry
NP165_04575 CDS
T08510
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vjp
Vibrio japonicus
Pathway
vjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NP165_04575 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vjp03019
]
NP165_04575 (rne)
03009 Ribosome biogenesis [BR:
vjp03009
]
NP165_04575 (rne)
Enzymes [BR:
vjp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NP165_04575 (rne)
Messenger RNA biogenesis [BR:
vjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NP165_04575 (rne)
Ribosome biogenesis [BR:
vjp03009
]
Prokaryotic type
rRNA processing factors
NP165_04575 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UUM31414
UniProt:
A0ABY5LL41
LinkDB
All DBs
Position
1:complement(942099..945056)
Genome browser
AA seq
985 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKQASDANPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
LQHISLVRPDFVSRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVRMDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETP
HFDVIRVREGEEFDLLSYLLPKKLEAMKEAEGREAPETETKPKKIEEPVLKGFAAPAQSA
PAPKPMPKAEEKKADVQESKPGLVSRLFKAISNFLFGSSSATDKVEEKKETTERKEGQRS
NRNRRNRNDQRRRSPRDNRSESRSDNREEKRDIKRDNKRKPQQRDEASSEGKVATERKPQ
NRKPKQDRRSKVDDVKATKVAEEGLKLAADAEQTEKPNRTEEKAAKVKERRQRRQLTKQV
RVKDQKAQAEAQEVVKEAKAEVVAEAVEQNVEAPAQEAEQGKQRRNRRSPRHLRASGQRR
RRGRDRRPNPFRLRKGGVASPEMAMGKVMPSYGIIKPAAKSKPKTEQVAVEAVESQVVLG
GFACPEMAMGKVIIRHDELTVEPAKTEIAKPIETPETPVEVVEKVEKVEAPIVEVEQAEE
VAIAKTQVTTSVATQAMTETISENAAPVFKGQASSPMTKASGPVEMKEIAVVAAPFREER
YQPKGAGSQVAKNQASAAMTKPVGF
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcaaaaagaagagttgcgtgttgctttggttgat
ggtcagagactgtacgatttagatatcgaaagccctggtcatgaatcgaaaaaagcaaat
atctacaaaggacgtatcactcgcatcgaaccaagtctggaagctgctttcgtagactat
ggtgcagaaagacacggtttcctccctcttaaagaaattgcccgcgaatacttccctgaa
ggctatacctatcaaggccgtccaagcattaaagaagtgctgaccgaaggccaagaagtc
atcgtacaagtagagaaagaagaacgtggcagcaaaggtgctgcgctaacgacgttcatc
tctcttgcgggtagttaccttgttctaatgcctaataaccctcgtgctggcggtatttct
cgccgaatcgaaggcgacgaacgcacacagctaaaagctgcactaagcactcttgaactg
ccgcaaggtatgggcctgattgttcgtacagcaggtgtgggcaaaagcgcagaagaactg
gagtgggatttaaacgtacttcttaaccattggggcgcaatcaaacaagcttctgatgcg
aatccagctcctttcctaattcaccaagaaagtaacgttatcgtacgtgctattcgcgat
tatttacgtcgtgatatcggcgaaattttaatcgatagcaatacgatctatgaacgtgca
ctacagcatatcagcctagtaagacctgactttgttagccgagttaagaaatacgacggt
gaagtaccgctgtttagccactatcaaatcgaaagccaaattgagtctgcattccaacgt
gaagttcgacttccatcaggtggttcaatcgttattgacccaactgaagcactgacttca
atcgatatcaactctgctcgtgcaacaaagggcggcgatattgaagaaacagcacttaac
acgaaccttgaagcagcggacgaaatcgctcgccagttgcgtctacgtgatttgggtggt
ttggttgttatcgactttatcgatatgacacccgttcgccaccagcgcgaagtagaaaac
cgtctacgcgacgcagtacgtatggatcgtgctcgtgtgcagattggtcgtatttctcgc
tttggtctactagagatgtcgcgtcagcgtctaagtccttctcttgcagaagctagccac
catatttgtcctcgctgtacaggtactggtgttgttcgcgacaacgaatctcttgctctt
tctgtacttcgtctgattgaagaagaagcgttaaaagacaacacagcgcaagtactggct
gttgtaccggtaccgatcgcatcttatcttcttaatgaaaaacgtcgctctgtgaaccac
attgagcgcattcaagaagttaagatcacagttgtgcctaattcagatatggaaactcct
cacttcgacgttattcgtgtacgcgaaggtgaagagttcgacctactctcttacctgcta
cctaagaaactagaagcaatgaaagaggcggaaggtcgtgaagcacctgaaactgaaact
aaacctaagaagattgaagagccggttctgaaaggctttgctgctcctgctcaatctgcg
ccagcaccaaaaccgatgcctaaagcagaagaaaagaaagcagatgtacaagaatctaaa
ccaggtcttgttagccgcctctttaaagctataagcaacttcctatttggttcaagctct
gcgacagacaaagtcgaagagaagaaagaaacgacagaaaggaaagaaggtcagcgcagc
aatcgcaatcgtcgcaaccgcaatgatcaacgtcgtcgcagtcctcgtgataaccgcagc
gaaagccgcagtgataaccgcgaagaaaaacgtgacattaaacgtgataacaaacgcaaa
ccgcagcagcgtgatgaagcttcaagcgaaggcaaagtagcaactgaacgcaagccgcag
aaccgcaaacctaagcaagatcgtcgtagcaaagttgatgatgtaaaagcaaccaaggtt
gcagaagaaggcttgaagctcgcagcagatgctgagcaaacggaaaaaccaaaccgtact
gaagaaaaagcagcgaaagtgaaagagcgtcgtcagcgtcgtcaactgactaaacaagtt
cgcgttaaagaccagaaggcgcaagcggaagcacaagaagttgtgaaagaagcgaaagcc
gaagtagtcgctgaagcggttgaacaaaacgtagaagcgccagcacaagaagcagaacag
ggtaaacaacgccgaaaccgtcgctcacctcgtcacctgcgtgcaagtggtcagcgtcgc
cgtcgtggccgtgatcgtcgccctaacccattccgcctacgtaaaggtggtgtagcgtct
cctgagatggctatgggtaaagtcatgcctagctacggaatcattaagcctgcagctaag
tcgaagccaaaaactgaacaagtagcagttgaagcggtagagagtcaagttgtattaggt
ggattcgcttgccctgaaatggcaatgggtaaagtgatcatccgtcatgatgagcttacg
gttgaacctgcgaaaactgaaatagcgaaacctattgaaacaccggaaacacccgttgaa
gttgttgaaaaggttgaaaaggttgaagctccaatcgtagaagtggaacaagctgaagaa
gtggccattgcgaaaacgcaagtcactacatcagtggctacgcaagcaatgacagaaacc
atctcagagaatgccgcgccagtattcaaaggccaagcatcatctccaatgaccaaagct
tcaggcccagtcgagatgaaagaaatcgccgttgtagcagcgccattccgcgaagaacga
taccagccaaaaggtgcaggtagtcaagtcgcgaagaatcaagctagcgcagcaatgacc
aaaccggtaggtttctaa
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