Vibrio japonicus: NP165_08435
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Entry
NP165_08435 CDS
T08510
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vjp
Vibrio japonicus
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vjp03032
]
NP165_08435 (topA)
03400 DNA repair and recombination proteins [BR:
vjp03400
]
NP165_08435 (topA)
Enzymes [BR:
vjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NP165_08435 (topA)
DNA replication proteins [BR:
vjp03032
]
Prokaryotic type
DNA Topoisomerases
NP165_08435 (topA)
DNA repair and recombination proteins [BR:
vjp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NP165_08435 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
UUM29743
LinkDB
All DBs
Position
1:complement(1783761..1786391)
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AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTAGQSTGQKAAAVSTKGLSPEE
KARIKKEKDRKSLIKKMGIDPYHGWEANYQILPGKEKVVAELQKLAEDADCVYLATDLDR
EGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQKPGELSMDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVERERAIKAFVPEEFWDIHADTKTTDKTDF
RLQVAQKDGVAFKPVNEAETKSALSVLENAAYEVCKREDRPTSSKPSAPFITSTLQQAAS
TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVETVREYINSEFGDAYLPSKANV
YGSKEGAQEAHEAIRPSDVTVKADDLNGMEADAHKLYALIWNQFVACQMTPAKYDSTTVS
VKAAEYTLKAKGRILKFDGWTRVQRPLGKNEDQILPAVQIGDKIELIKLDPKQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVEQRRFYAEKMGEIVTDRLDDSFH
ELMNYEFTSRMEEKLDQIAEGEANWKGVLDNFFEDFTGDLEKAEQDEDHGGMKPNHIVYT
DIECPTCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGYVVEHGEYKVKGYDGPVVECDKCGS
DMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHLPELPCENSDAYFVLRDGA
SGLFLAASTFPKSRETRAPLVEELVRFKDRLSPKFHYLTEAPQKDPDGLPMVVRFSRKSK
ENYVRSEIDGKPSGYTALYVDGKWEVTDKRKKPVKK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagtcactggttattgtggagtcgccagccaaagcgaaaaccatcaataagtat
ttgggtaaagactttgttgtaaagtccagtgtaggtcacgttcgtgatctgccaactgct
ggccaaagcacaggtcaaaaagcagcagcggtatcaaccaaaggcttaagtcctgaagaa
aaagcacgaatcaagaaagaaaaagatcgtaaatctctaatcaaaaaaatgggcattgac
ccatatcatggttgggaagcgaattatcaaattctgcctggcaaagaaaaagtcgtcgca
gagcttcagaagttagcagaagacgcggactgcgtttatctagcaaccgatttggaccgc
gagggagaggccatcgcttggcaccttcgtgagatcatcggtggcgatgaagagcgatac
aaacgtgtagtatttaacgagattactaaaaatgcgattcagcaagctttccagaaacct
ggtgagctcagtatggatggcgtgaacgcacaacaagcacgccgtttcatggaccgcgtt
gttggcttcatggtttctccgctgctttggaaaaaagtagcacgcggtttgtctgcaggg
cgagtacagtcggtagcggtgaagctactggttgaacgtgagcgcgcgattaaggcattt
gttccagaagaattctgggatattcacgcagacaccaaaaccacagataaaacggatttc
cgtctacaagttgctcagaaagacggtgtggcgtttaaacctgtcaatgaagcggaaacc
aaatctgcactttctgttctagaaaatgcggcttacgaagtgtgtaagcgtgaagaccgc
ccaacatcgagcaagccttctgcgccatttatcacgtcaacgctgcagcaagctgcaagt
acacgacttggctacggcgtaaagaaaacaatgatgttggctcagcgactgtatgaagcg
ggttacatcacctatatgcgtacagactcgaccaatctgagtgcagaagctgttgaaacc
gtccgcgaatacattaacagtgaattcggtgacgcttacctgccatcaaaagcgaacgtg
tacggcagcaaagaaggggcacaagaagcgcacgaagcaattcgaccttcagatgtcact
gtgaaggcggatgaccttaacggtatggaagcggacgcacacaagctgtatgcgcttatt
tggaatcagtttgttgcttgtcaaatgacgccagcgaagtacgactcaaccacagtgagc
gtaaaagcggcggaatacacgttaaaagcgaaaggtcgaattctgaagtttgatggttgg
actcgtgttcaacgtcctcttggtaagaacgaagatcaaatccttccagcggtacaaatt
ggcgataaaattgagttgattaaactcgatcctaagcagcactttactaagccgccagcg
cgctttactgaagcagcattggttaaagagttagaaaagcgtggcattggccgtccttcc
acttacgcttcgatcatctctaccatccaagaccgtggttatgtaaaagttgagcagcgt
cgattctatgcagaaaagatgggtgagatcgtaacagaccgtctagacgatagtttccat
gagttaatgaattacgagtttacttcgcgtatggaagaaaaactcgaccaaatcgcagaa
ggcgaggcgaactggaaaggcgttctcgataacttcttcgaagacttcactggcgatctg
gaaaaagcagagcaagacgaagaccacggtggtatgaagccgaatcacatcgtctacaca
gacatcgaatgtccaacgtgttcacgcccgatgggaattcgtaccgcgtcaaccggtgtg
ttcttaggttgttcgggttacgcactaccacctaaagagcgttgtaaaacgaccatcaac
ttgggtgatgaagaaggcattatcaacgttcttgaagaagatgttgaaaccgcagcattg
cgtgctaagaagcgttgtccaatctgtgaaaccgcgatggatgcttacttaattgatgat
aagcgtaaactgcacgtttgtggtaacaacccgaactgtgaaggctacgttgtcgaacat
ggtgagtacaaagtcaaaggttacgatggcccagttgttgagtgtgacaaatgtggcagt
gacatggtgcttaaaaatggtcgtttcggtaaatacatggattgcaccagcgaaacatgt
aagaacacgcgtaaaattttgaagaacggtgaagttgcaccaccaaaagaagatcctgta
cacctacctgaacttccatgtgaaaactcagacgcgtattttgttctacgtgatggtgct
tcgggtctgttcttggctgcgagtactttccctaaatcacgtgagactcgcgctccgtta
gtagaggaactcgttaggtttaaagatcgtctttcaccgaagttccactacttgaccgaa
gcgccgcagaaagacccggatggtcttcctatggtggtgcgttttagccgtaaatctaaa
gagaactatgtacgctctgaaattgacggcaaaccatcaggctatacggcgctttatgtg
gacggaaaatgggaagtgaccgataagcgtaaaaaacctgtcaaaaagtag
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