Vibrio japonicus: NP165_10635
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Entry
NP165_10635 CDS
T08510
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vjp
Vibrio japonicus
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vjp03009
]
NP165_10635 (srmB)
Enzymes [BR:
vjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NP165_10635 (srmB)
Ribosome biogenesis [BR:
vjp03009
]
Prokaryotic type
rRNA helicases
NP165_10635 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
AAA_30
AAA_11
AAA_22
AtuA_ferredoxin
UMPH-1
Motif
Other DBs
NCBI-ProteinID:
UUM30149
LinkDB
All DBs
Position
1:2259148..2260374
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AA seq
408 aa
AA seq
DB search
MIKNFADLELDSNLLTAIEDMGYARPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP
ALQYLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHAD
ILSTTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWR
KQTLLFSATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWYHRADNMEHKLELLKK
IIVEQAERSIIFLKTRERLAELRAELESAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVL
LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSLVEAHDQPMLDR
VARYVKEEIKERFIKELRPKHKKPVFKKKKKDDKKKTATKKKVAKKKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaaaaattttgctgatttagagttagattctaacttactaaccgcaatcgaagac
atgggctatgcccgtccaacacagattcaagctgaagcgatcccacaagctttagacggt
cgtgacatcttagcttctgcgccaaccggaacaggtaaaacagcagcattcgtcttgcca
gcactgcaatacttgcaagacttccctcgccgtaaaccaggacctgcccgcgtgttaatt
ttgactccaacgcgagagttagcaatgcaggtagcagatcaagcacgtgcgctggcaaaa
aacacaaaactgaacattttcaccattacaggtggtgttcaatatcaagaacacgcagat
attctgtcgacaacacaagatatcgtggttgcaactccgggccgtttgatggagtacatt
gaggcagaacgctttgattgtcgtgcgatcgagtggcttattctagatgaagcggaccga
atgctggacatgggctttggcccaacggtggatcgcttatcttctgagtgtcgctggcgt
aagcaaacgctgctgttctctgcaacgcttgaaggcaaaggtgtggaaggcttcaccgct
gatctactcaaagaccctgctgaaattgatgcagagccatcacgtcgtgagcgtaagaaa
atcgctcaatggtatcaccgtgccgacaacatggagcacaaactcgagcttttgaagaag
atcatcgtagagcaagctgaacgctcgatcatcttcctaaaaacccgtgaacgcctggct
gagcttcgcgctgaacttgaaagtgctcaaatcccatgtgcttggattcaaggtgaaatg
cctcaggatcgccgtaacaacgctatcgcacgtttccgtgatggtacagtcaacgtacta
cttgccacagacgtcgccgctcgtggtatcgaccttccagatgtgagtcatgtcatcaac
tacgacatgccacgcactgctgatgtctaccttcaccgtatcggccgtactgcgcgagca
ggtaaaaaaggtaatgccgtttctcttgtggaagcacacgaccaaccaatgttggatcgc
gtagcccgctatgtaaaagaagagatcaaagagcgctttatcaaagagcttcgtcctaag
cacaaaaagcctgtgtttaagaaaaagaaaaaagacgataagaagaagactgctacgaaa
aagaaagtcgcaaaaaagaagaaataa
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