Vibrio japonicus: NP165_10880
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Entry
NP165_10880 CDS
T08510
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vjp
Vibrio japonicus
Pathway
vjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NP165_10880 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vjp03019
]
NP165_10880 (pcnB)
Enzymes [BR:
vjp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
NP165_10880 (pcnB)
Messenger RNA biogenesis [BR:
vjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NP165_10880 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
YtxK_like
Motif
Other DBs
NCBI-ProteinID:
UUM30198
LinkDB
All DBs
Position
1:2329083..2330450
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AA seq
455 aa
AA seq
DB search
MNKNDYTPSETNIYPELSLNVITRQEHNISRKQISDNALKVLYRLHGAGFDAYLVGGGVR
DLLLSQHPKDFDIATNATPEQIRHLFKNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQES
SKNVSQQSKEGMLLRDNVYGTIDEDAERRDFTINAMYYSIADYSIHDYAGGIEDLQDKLV
RLIGDPETRYREDPVRMLRAIRFAVKLDFDIEEETAAPIEEMALLLRDIPPARLYEESLK
MLQSGHGLETYHLMREYNLFQQLFPTIAEFFTEDYSSNTEQMLDVVLDATDQRIEEGKRI
NPAFMFAAMLWYPLQEKAEWLMEKHNFSYYDAVMEASNIILDEQVRTIAIPRRHTATIRE
IWQLQLRLPRRNGKRAFRLMELNKFRAGYDFLEMRGEIEGGETTQLAKWWNTFQSAGRNM
RQAMVADIDGPTSSSGTPKKRRRKNFRKSKPKATS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacgactatacaccaagcgaaacaaacatatacccagagctatctctgaat
gtcataactcgccaagagcataatatctctcgcaaacagatcagcgataatgcattgaag
gtgctatacagacttcatggtgcaggctttgatgcgtatcttgttggtggtggagtacgc
gatttattactcagccagcaccctaaagattttgatattgcgaccaacgcaacgccagag
caaattcgccacctctttaaaaactgtcgcttaatcggccgacgttttagactggctcat
atcatgttcggtcgcgatattatcgaagtagccactttccgaggtcatcaccaagagtcg
agtaagaatgtctctcagcagtctaaagaaggcatgttgctgcgtgataatgtctacggc
accattgacgaagatgccgagcgtcgtgactttacgatcaatgcgatgtactacagcatc
gcagactactcgatccacgactatgcaggtggcatagaagatctgcaagacaagcttgtc
cgcttaatcggcgatcctgaaactcgttaccgtgaggatccggtgcgcatgctgcgtgcc
attcgtttcgccgttaaactcgatttcgatattgaagaagagacagcagcgcctatcgaa
gaaatggcgctccttctacgagatattccaccagcgcgcctgtatgaagaatctctaaaa
atgctgcagtcaggtcacggattagaaacctaccacctgatgcgtgagtacaatttgttc
cagcagctattcccaaccattgctgagtttttcactgaagattactcatcaaacactgaa
cagatgctggatgtagttcttgacgccaccgaccaacgcattgaggaaggcaaacgcatt
aatcctgcgtttatgtttgcggcaatgctttggtatcctctgcaagaaaaagcagaatgg
ctaatggagaaacacaacttctcctattacgatgccgttatggaagcgagcaatatcata
ctagatgagcaagttcgtaccattgcgatccctcgtcgtcacaccgcgactatccgcgag
atttggcaacttcagctgcgactgcctcgtcgcaatggtaaacgcgcattccgtctgatg
gagctgaataagttccgagcaggctatgactttttagagatgcgcggtgaaattgaaggt
ggagagaccacccagctcgctaagtggtggaatactttccaatctgctggccgaaatatg
cgccaagcgatggttgccgatattgatggaccaacatcaagctcaggcacaccgaagaaa
cgtcgccgcaaaaactttcgtaagagcaaaccaaaggcaacatcatga
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