Vibrio japonicus: NP165_12025
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Entry
NP165_12025 CDS
T08510
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vjp
Vibrio japonicus
Pathway
vjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NP165_12025 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vjp03019
]
NP165_12025 (rnr)
03016 Transfer RNA biogenesis [BR:
vjp03016
]
NP165_12025 (rnr)
Enzymes [BR:
vjp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NP165_12025 (rnr)
Messenger RNA biogenesis [BR:
vjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NP165_12025 (rnr)
Transfer RNA biogenesis [BR:
vjp03016
]
Prokaryotic type
tRNA degradation factors
NP165_12025 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
Casc1_C
Motif
Other DBs
NCBI-ProteinID:
UUM30396
LinkDB
All DBs
Position
1:complement(2528344..2530803)
Genome browser
AA seq
819 aa
AA seq
DB search
MSDNIPNDPFADRESENYENPIPSREFILEFLEQAGVPMNRNDLFESLQLKGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHRDGHGWVRPEGSTGKDNDIVLPHH
QMKNIIHGDYVLVQPTQNSKRGRKEGRLVRVLEERTGQIVGRFFMEYGYSYVVPDDSRIS
QDILIPNELKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHEWPVEVDKQIVGLGEEVPEEAKQGRVDLRELPLVTIDGEDARDFDDAVYCEALPDGGW
KLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTLSETGKLTGYKHYEAVMNSHARLTYTKVHEILEGDEELRQRYEPLVVHLEELHKM
YKTLKKAREHRGAIEFESVETKFIFNAERKIDSIEPVIRNDAHKIIEECMILANIASASL
VEKAKEPALYRIHESPGEERLTGFRDFLSELGLDLKGGLEPSPMDYADLARQIAERPDQE
LIQTMLLRSMKQAVYNADNVGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGDELEGVIA
NVTSFGFFVRLTELHIDGLVHISTLANDYYQFDPIGQRLIGESFGAIYRLGDAVKVKVLS
VNLDDRQIDFELVETSRKLRGKGKTAKKRAAEAQSKAKAKKRAATKGSGKASPNIEPTVR
PESVERKEGPKKPKVTKARKKKPNSKPRKAKSSKHAKAQ
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataatatcccaaacgacccatttgcagatcgtgagtcggaaaattacgaaaac
ccaattccaagccgagaatttattctggagttcctggaacaagcgggcgtgccgatgaat
cgcaatgacctgtttgaatctcttcagcttaaaggtgaggagcaatatgaaggcttacga
cgtcgcttaagagcgatggagcgagatgggcaactcgtgttcactcgtcgccagtgttat
gcgttacctgaaaaacttgaaatggttaaaggctacgtcattggtcatagagatgggcat
ggttgggtgcgtcctgaaggaagcacaggtaaagacaatgatatcgtcttaccgcaccat
cagatgaaaaacatcatccatggcgattatgttctggttcaaccgacacaaaactcaaaa
cgtggccgcaaggaaggtcgtttagttcgtgtactagaagagagaacagggcagatcgtc
ggccgtttctttatggaatatggttactcgtatgtcgtgcctgatgattcccgtatatct
caagacatcctgattccaaatgagttgaaagcgggcgctcgcatggggaacgtggtcgtg
attgagattactgatcgcggttcacgttcacgcggaatgatgggcaaagtagttgaagtg
cttggggagaacatggctccggggatggaaacgcaaattgcaatccgtacacaccagatc
cctcatgaatggccagttgaagttgataagcaaattgtagggttgggtgaggaagttcca
gaagaagcgaaacaaggccgtgtcgatctgcgtgaactcccgttggtgaccattgatggt
gaagatgcccgagactttgatgacgcggtgtactgcgaagcccttcctgatggtggttgg
aaactatgggtagcgattgctgatgtcagctattacgtccgcccggattccgcactggat
aaagaagcaatcaaccgtggtaactccgtatacttcccatctcaagtggtaccaatgcta
ccagaggtgttgtctaacggtctatgttctctaaacccgcaggtggatcgcttgtgtatg
gtttgcgaaatgacattgtctgaaacgggtaaactgacgggttacaaacactatgaagcg
gtaatgaattcgcacgctcgtctaacatacaccaaagttcacgaaatcctcgaaggtgat
gaagaacttcgtcaacgatacgagcctttggtcgtgcatcttgaagaactgcataaaatg
tataagacacttaagaaagcgcgtgaacatcgcggagctatcgagtttgaaagtgtcgag
actaagtttatcttcaatgcagaacgtaaaattgacagcattgaacctgtcattcgtaac
gacgctcataaaatcattgaagaatgtatgattctggccaatatcgcgtctgcgtcattg
gtagaaaaagcaaaagagccagcactttaccgtattcacgagtctccaggtgaagagcga
ttgacgggctttagagatttcttgagcgaattgggtttagacttgaaaggtggtttagaa
ccatcaccaatggattacgcagatctagcacgtcaaattgcagaacgtccagaccaagaa
ctgatccaaactatgctgctgcgttcaatgaagcaggcggtgtacaacgcagataatgtt
ggccactttggtctagcactcaagcgttacgcgcatttcacatcaccaatccgccgttat
cctgatttgcttttacaccgtgcgattaaatatctgatcgcgaaacaagaagggcgtaat
caagatcgctggactccaacgggtggttaccactattcgtttgacgatatggatttctat
ggtgagcagtgctcgatgactgagcgccgtgcagatgatgcaactcgagaagtggcagac
tggcttaagtgtgagtacatgcaagaccatgtcggcgatgagctggaaggtgtcattgcc
aacgtaacgagttttggtttctttgttcgcctgaccgaactgcacattgatggcttggtt
catatttcgacccttgctaacgactactatcaatttgacccgattggtcaaaggcttatc
ggtgaaagctttggtgcgatctatcgtttaggtgatgcggtaaaagtgaaagtcttgtcc
gtgaacttagatgatcgtcaaattgactttgaattagtcgaaacaagtcgtaagctacgc
ggcaaaggaaaaacggcgaagaaacgcgcggcagaagctcaatcgaaagcaaaggcgaaa
aagcgtgctgcaacaaaaggcagcggcaaagcctctcctaatattgagccaactgtacgc
ccagaatcggtagagcgtaaagaggggcctaaaaagcctaaagtcaccaaagcgcgtaag
aaaaagccgaacagtaagcctaggaaagccaaaagtagcaaacacgcgaaagcgcagtaa
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