Vibrio japonicus: NP165_12880
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Entry
NP165_12880 CDS
T08510
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vjp
Vibrio japonicus
Pathway
vjp03030
DNA replication
vjp03410
Base excision repair
vjp03420
Nucleotide excision repair
vjp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NP165_12880 (polA)
03410 Base excision repair
NP165_12880 (polA)
03420 Nucleotide excision repair
NP165_12880 (polA)
03440 Homologous recombination
NP165_12880 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vjp03032
]
NP165_12880 (polA)
03400 DNA repair and recombination proteins [BR:
vjp03400
]
NP165_12880 (polA)
Enzymes [BR:
vjp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NP165_12880 (polA)
DNA replication proteins [BR:
vjp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NP165_12880 (polA)
DNA repair and recombination proteins [BR:
vjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NP165_12880 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NP165_12880 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UUM30557
LinkDB
All DBs
Position
1:complement(2708971..2711760)
Genome browser
AA seq
929 aa
AA seq
DB search
MARIPDNPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFSSERIAV
VFDAKGKTFRDEMYAEYKANRPPMPDDLRCQIEPLHDVIRAMGLPLISIPGVEADDVIGT
LAYQASQQGMPVLISTGDKDMAQLVDENVTLINTMTNVVMDREGVIEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGGLDKLYENLDDIAPLGFRGSKTMAKKLLDNK
DNAMLSYELATIKLDVELEETPETLIKTTPNKDELIKLYGQLVFKSWLNELLDGGTGVVE
AVEKSGASAPSTSVAPELETPAVTIDRSQYETILDEESFNAWLEKLKAADVFAFDTETDS
LDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPKQLDRDWVLAQLRPILEDDNQAKVGQN
LKYDASVLARYDIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKG
KKQLTFNQIELDQAAPYAAEDADVTLRLHHRLIACIENDEKLKAIYEEIEVPLVPVLSRI
ERTGVLIDDMMLAAQSQEIAQRLDELEQKAYEVAEQEFNMNSPKQLQAILFEKMGLPVIK
KTPSGTPSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYH
QAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPRGYKIMAVDYSQIELRIMAHLSGD
KALLEAFQQGKDIHAATAAEIIGVDIEEVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIP
RGEAQQYMDTYFERYPGVMQYMEDTRSTASEQGYVETIFGRRLHLPEIKSRNGMRRKAAE
RAAINAPMQGTAADIIKKAMLLVDEWIQQEGNGRVKLLMQVHDELVFEVEESSLAEIESK
VQQLMESAAQLEVPLVAEAGHGDNWEQAH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtattccagacaatccattgatccttatcgatggttcttcttatctataccgt
gcatttcacgcttatccaggcaccatgagtaatggtgaaatcccaactaacgccgtttat
ggtgtagtgaatatgctacgaagcatgatgcgtcagttcagcagtgaacgaattgccgtt
gtttttgatgcgaaaggaaaaaccttccgtgatgagatgtatgcggaatacaaagccaac
cgtccaccaatgccagatgatttgcgctgccagattgaaccgctgcacgacgttattcgt
gctatgggtttgccgcttatctcgattccgggtgttgaagccgatgatgtcattggcacg
ttagcttaccaagcgtctcagcagggcatgcctgttttgattagtactggcgataaagac
atggctcagctggtggatgagaacgtcacactgatcaacaccatgacaaatgtcgtcatg
gatcgtgagggcgtgattgagaagtttggcattccaccggagttgatcatcgattacctc
gcgctgatgggcgacaaagtggataacatcccaggtgttcccggtgtcggtgataagaca
gcaacagctttacttcagggcattggcggcctagataaactgtatgaaaaccttgatgac
attgcaccactgggcttccgtggttcaaaaaccatggcgaagaagctgctggacaacaaa
gataacgcgatgctttcttatgagctggcaacaatcaaactcgatgttgagcttgaagaa
acgcctgaaacacttattaagactacgccaaataaagatgagctgattaagctatatggc
cagttggtattcaagtcgtggctcaatgagctactcgatggcggcacaggtgtcgttgag
gcggtagaaaagtcgggcgcgagcgctccatcgactagtgttgcaccagagctggaaaca
ccagctgtgaccattgatcgcagccaatacgaaaccattctagatgaagagtcatttaac
gcttggcttgagaagctcaaagctgcggacgtgttcgcctttgataccgagacagacagc
ctagactacatggtagcgaacctagttggtttgtcgtttgcgaccgaagaaggcgtggct
gcttatgtgccggttgcgcatgactatcttgatgcaccaaagcagcttgatcgtgattgg
gtgcttgcgcagctcagacctatcttagaagacgataaccaagcgaaagtcggccaaaac
ctgaagtacgatgctagcgtgttagcgcgatacgacattgagatgaaaggcatcaagcac
gacaccatgctggcgtcttacgtgtacaacagtgttggcggcaagcatgatatggatagc
cttgcgctgcgtttccttcagcatagctgtatctcattcgagcaaatcgcgggtaagggc
aaaaagcagcttacattcaatcaaatcgaactggatcaagcagcaccttatgcggcagaa
gatgcggatgttactctacgcctgcaccaccgtctgattgcttgcattgagaacgatgaa
aaattaaaagccatctacgaagagatcgaagtaccgctagtgcctgttttatcacgtatc
gaacgtactggcgtattgattgacgacatgatgcttgctgctcaatcgcaagaaattgca
cagcgtttagatgagctagaacagaaagcgtatgaagtagcagagcaagagttcaacatg
aactcaccaaagcaactacaagcgatcttatttgaaaagatgggcttgccagttatcaag
aaaacgccatcaggtacgccgtcaacgaacgaagaagtactgcaggagctcgcgcttgat
tacccactgccaaaactgattcttgaataccgcggtttagcgaaactgaaatcaacatac
accgataaactgccgaagatgatcaacccagaaacgggtcgtgttcatacgtcttaccat
caagcggtgacagcgacggggcgcttatcttcaaccgatccaaacttacagaatattcca
attcgaaatgaagaaggtcgccgtattcgtcaggcgtttattgcgccgagaggctacaag
atcatggcggtcgactactctcagattgaacttcgtatcatggcacatttatcgggtgat
aaagcattacttgaagcgttccaacagggtaaagatatccacgccgcgactgctgcagag
attatcggcgtagacatcgaagaagtgaccagcgagcagcgtcgtcgtgctaaagcagtg
aactttggtcttatctacggcatgagtgcgtttggcctagcaaaacagctgggcattcca
cgtggtgaagcgcagcaatacatggatacttactttgagcgttacccaggtgtgatgcaa
tatatggaagacactcgtagcacggcatcagagcaaggctatgttgagaccatctttggt
cgtcgtcttcacctgccagagatcaagtcgcgtaacggcatgcgtcgtaaagcggctgaa
cgtgcggctatcaacgccccgatgcaaggtaccgcggccgacattattaagaaggcgatg
ctgcttgttgacgagtggattcaacaggaaggcaacggccgcgtgaagctactgatgcaa
gttcacgatgaattggtgtttgaggtggaagagtcctctttggccgaaattgaaagtaaa
gtacaacaattgatggagtctgcggctcaactagaagtaccgttggttgcggaagcaggc
catggtgacaactgggaacaagctcactag
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