Vibrio japonicus: NP165_15805
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Entry
NP165_15805 CDS
T08510
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vjp
Vibrio japonicus
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vjp03016
]
NP165_15805 (rnb)
Enzymes [BR:
vjp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NP165_15805 (rnb)
Transfer RNA biogenesis [BR:
vjp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NP165_15805 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
UUM33014
LinkDB
All DBs
Position
2:complement(579816..581819)
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AA seq
667 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGTIKATEKGFGFLEVDSKTSFFIPPPYMKKCLHGDKV
KAIIRTEKEREVAEPEELLEQTFTRFIGRVKLFKGKLNVAPDHPQMKKLSLKANVKKGLK
SDDFKEGDWVVAHLTRHPLKGDNGFFVEISEKITDANDKIAPWWVTLAENDLPNSEPAGI
ENWEVKDDADLERIDMTHIPFVTIDGESTKDMDDALYAKKLDSGDFELTIAIADPTAYIT
PDSEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLIENEVRPALCCSVTVSKDGVIGD
DIQFFAANIKSHARLVYDNVSDWIENGGCEAWQPNEHIAEIVRDLYEFSKARAEWREKNA
VVFPDRPDYRFELSEDNDVVAIHADMRRCANRLVEEAMITANICAGRTLQASFGSGVFNT
HAGFKPEKIEDVVALINPEGELPFTTESITTLEGFAELRRWLAKQDTSYLDNRIRKYQTY
SEIGNQPLPHYAMGLELYATWTSPIRKYGDMINHRILKAHVLGKEPVQTADETVGEELAL
HRKHHKIAERNVGDWLYARTLADEVEKGTVFNGEIFDISRAGARIRLMENGAAAFIPGSL
ILANKERLACDGENGTISIDKEVVYRLGDVLEVVLNDVNQENRSLVAKPVQVFEDVKPIE
QPEVAAD
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagataacccgctactggctcaacttaagcagcaaatccaagaaaacctacct
aaaaaggaagggacaatcaaagcgactgagaagggctttggcttccttgaagtagacagt
aaaaccagctttttcattccaccaccgtatatgaaaaagtgtcttcatggcgacaaagta
aaagcgattatccgcactgaaaaagagcgtgaagtggcagaaccagaagagttattggag
caaacatttacgcgcttcattggtcgtgtaaagctgtttaagggcaagttgaatgttgcg
ccagatcatccgcagatgaagaagttatctctaaaggctaatgtcaagaaaggccttaag
agtgatgacttcaaagagggggattgggttgtcgcacatctgacgcgtcatccgttgaaa
ggtgataacggtttctttgtagaaatctctgaaaagatcacagatgcgaacgataaaatt
gcaccttggtgggttacgttggcggaaaatgatctaccaaatagtgaacctgcgggtatc
gaaaactgggaagtgaaagacgacgctgatttagagcgtatagatatgacccacattcct
tttgtgaccatcgatggtgagtcaacaaaagatatggatgatgccctttatgcgaagaaa
ctcgacagtggcgacttcgagctgacgattgccattgctgatccaacagcatacatcact
cctgacagcgagatggacaaagtagcacgtgagcgtggtttcacgatttaccttccaggt
cgcaacatcccaatgctaccacgcgacctcgcggatgaactgtgttcactgattgaaaac
gaagtgcgcccagcactatgttgtagcgtcacggtaagtaaagacggcgtgatcggcgac
gatatccagttctttgctgctaacatcaagtctcacgctcgcctggtatatgacaacgtt
tcagattggatcgagaatggtggctgtgaagcatggcaaccaaacgaacatatcgcagaa
attgttcgtgatttgtatgaattttcgaaagcgcgtgccgagtggcgtgagaagaatgcg
gttgtgttcccagatcgtccagactatcgctttgagttgagtgaagacaacgacgttgtt
gcgattcatgccgatatgcgtcgttgcgcaaaccgtctggttgaagaagccatgatcacc
gctaacatttgtgcgggtcgcacactgcaagcgagctttggttcaggcgtatttaacaca
cacgctggttttaaacctgaaaagattgaagatgtggttgcgcttattaaccctgagggt
gagctgccatttaccacagaatcgattacaacgcttgaagggtttgcagaattgcgccgc
tggctagcgaagcaagacacctcttacctcgataaccgtatccgtaagtaccagacctac
agcgagatcggcaatcagccactgccacattacgcaatgggactagagctttacgcgact
tggacatccccaattcgtaagtacggcgacatgatcaaccaccgtattctaaaagcacat
gtattgggtaaagagccagtgcaaacggctgacgaaaccgtgggtgaagaactagcgcta
caccgcaagcaccacaagattgcagaacgcaatgtcggtgattggttatacgctcgtaca
ttggcggatgaagtagagaaaggtaccgtatttaacggtgagatctttgatatttcgcgt
gcgggtgcacgaatccgtctgatggaaaatggtgcggcggcatttatacctggctctttg
attcttgcaaacaaagaacgtctggcgtgtgacggtgaaaatggcactatctcaatcgac
aaagaagtggtttaccgattaggtgatgtgctggaagtggttctcaacgatgtgaaccaa
gaaaatcgcagccttgtggcaaagcctgtacaagtgtttgaagatgtcaaaccaatagaa
caaccggaagttgcagcggattaa
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