Vibrio japonicus: NP165_15810
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Entry
NP165_15810 CDS
T08510
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vjp
Vibrio japonicus
Pathway
vjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NP165_15810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vjp03019
]
NP165_15810
03009 Ribosome biogenesis [BR:
vjp03009
]
NP165_15810
Enzymes [BR:
vjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NP165_15810
Messenger RNA biogenesis [BR:
vjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NP165_15810
Ribosome biogenesis [BR:
vjp03009
]
Prokaryotic type
rRNA helicases
NP165_15810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
UUM33015
LinkDB
All DBs
Position
2:582186..584129
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AA seq
647 aa
AA seq
DB search
MTDSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLMAGSDALGKAQTGTGKTAAF
SLPLLNKVDFSQRKPQAIVLAPTRELAIQVAAEMKNLGKNISGLKVLEIYGGASIVDQMR
ALKNGAQIIVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPSS
AQRVLFSATMPPMLKNIVERFLREPVTIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTI
ERVTKSSMEEIQLPMRDKVAEARLVKLGAELEADKEHKALEKFSELVEKLQETLEIDATT
LAAILLKRQQGKRPLFYIGEDPMIEAIERDKKRRQDRREGGRDGRREGGRDFNSNQDWDT
YQFQVGREQGVQVKDIVGALANELGLTKGSIGAIKLAQGETYVQLPKAMSSDAATKLSKL
RIRQKQVDAVVCDFNDFREPRGRRDGGRDGGGRGRDGGRREGGFRNRDGNREGNREGGGY
RGNREGGRGNREGGRDGERRFDRNRGGDHRGNHRGERGHGRARRSEG
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgacagattctgtaatccagtttagcgatctagcgcttaacgactctatcctttctgct
cttgacggaatgggtttcgtttcaccaactccaattcaggcggcggctatccctcacctg
atggctggttcagacgcactaggtaaagctcaaacgggtactggtaaaacagcagcgttc
tctctgccacttctaaacaaggttgatttctctcaacgtaagccacaagcgatcgtgctt
gctccgactcgtgagctagcaatccaagtagctgctgagatgaagaacctaggtaaaaac
atctctggccttaaagtgctagaaatctacggtggtgcatctatcgttgatcagatgcgt
gctcttaaaaatggcgcgcaaattatcgtaggtacaccaggtcgtgttcaagacctaatc
aaccgcgatcgccttcacctagacgaagtacacacattcgttctggatgaagcagacgaa
atgctaaacatgggtttcgttgatgacgtaacagcgatcatggaacacgcgccatcttct
gcacaacgtgttttgttctctgcgactatgcctccaatgctgaaaaacattgttgagcgc
ttcctacgtgaaccagtaacgattgacgttgcgggtaaaaaccacacagtagataaagta
gagcaacaattctgggttgttaaaggcgtagaaaaagacgaagccatgtctcgtctactt
gaaactgaagagactgacgcgtctatcgtattcgtacgtactcgtcaggatactgagcgt
ctggctgattggttatgtgcacgcggcttcaaagcgtctgcactacacggtgacattcct
cagtctctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacattcttgtt
gcaactgacgttgttgctcgtggtcttgacgttcctcgtatcacgcacgtatttaactac
gacatcccattcgatgttgagtcatacatccaccgtatcggccgtactggtcgtgctgga
cgtaaaggtaaagcgatccttctagttcgcacaaaccaaatgcgtatgcttcgcactatc
gagcgcgtaactaagtcttcaatggaagaaatccaacttccaatgcgtgacaaagttgct
gaagctcgtctagttaaactaggtgctgaactagaagcagacaaagaacacaaagcgcta
gagaaattctctgagctagttgaaaaactgcaagaaacgctagaaatcgatgcaactaca
ctagctgctatccttcttaagcgtcagcaaggcaaacgcccgctattctacattggcgaa
gacccaatgattgaagcaattgagcgtgataagaaacgtcgtcaagatcgccgcgaaggt
ggccgtgatggtcgtcgtgaaggtggacgtgacttcaacagcaaccaagattgggatact
taccagttccaagttggtcgcgagcaaggcgttcaagtgaaagacatcgttggtgcacta
gcaaacgaactaggcctaactaaaggttctatcggcgcgatcaaactggctcaaggcgaa
acttacgttcagctgccaaaagcaatgtcttcagacgcagcaactaagctaagcaagctt
cgtattcgtcagaaacaagttgacgctgttgtttgtgacttcaacgatttccgtgaacct
cgtggtcgccgtgacggtggtcgtgatggtggtggtcgtggtcgcgatggcggtcgtcgt
gaaggcggtttccgtaatcgtgatggtaaccgtgaaggcaaccgcgaaggcggcggctac
cgtggtaaccgtgaaggtggtcgtggtaatcgtgaaggcggccgtgatggcgaacgtcgt
ttcgaccgtaaccgtggtggtgatcaccgtggtaaccatcgtggtgaacgtggtcatgga
cgtgctcgtcgcagcgaaggttaa
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