Vibrio japonicus: NP165_16740
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Entry
NP165_16740 CDS
T08510
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vjp
Vibrio japonicus
Pathway
vjp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NP165_16740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vjp03000
]
NP165_16740
03400 DNA repair and recombination proteins [BR:
vjp03400
]
NP165_16740
Enzymes [BR:
vjp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
NP165_16740
Transcription factors [BR:
vjp03000
]
Prokaryotic type
Helix-turn-helix
AraC family
NP165_16740
DNA repair and recombination proteins [BR:
vjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NP165_16740
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
ACT_5
Motif
Other DBs
NCBI-ProteinID:
UUM33153
UniProt:
A0ABY5LQN2
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All DBs
Position
2:794133..795446
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AA seq
437 aa
AA seq
DB search
MARDARFDGRFYIAVKTTGIFCRPICPANLPREENVEYFLDKAQALQAGYRPCLRCRPDS
APSSWAWKGVETTFLRALKLIERGELQTASLAELSDRLGISDRYLRQLFQDHLGMSPKQY
ALYHQLMFAKQLIHSSSLPISEIAFASGFQSIRRFNDAFKKVIKLTPSQVRKDEQAQTEV
SYIDLAFKGALDWQHMLDFYRLRAIEGIESIDDVSYQRSFTIANNPGWFKIYPVKTGVMR
VEFNLEDTRQLKTLVNQLRRMFDLDTDILHIEQQLSQLAPQFIERTGIRIPGVWSTWEAG
VRAILGQQVSIKAAIGQLNLLVHTLQPNGASHFPTPEEVSQADLSFLRMPQSRKETLARF
ARFVTENPESTPEQWLQIKGIGPWTVNYARLRGASEPNCFLAGDLVVKKAIEKFPSITTD
SVSPWGSYATFHCWSHA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggcgagagatgcacgattcgatggtcgtttctatatagcggttaaaacgacagggata
ttttgtcggcctatatgccctgcgaatttgcccagagaagagaatgttgagtatttccta
gacaaagctcaagcgctacaggcgggttatcgcccgtgtttgcgatgtcgtccggacagt
gcgccgagctcttgggcttggaaaggggtagagacgacgtttctgagagcgttgaaactc
attgagcgtggtgaattacaaacggcaagtctagcggaattgtcagacagacttggtatt
agcgatcgttatctcaggcaattgtttcaggatcatttagggatgtctcctaagcaatac
gccttgtatcaccaattgatgtttgccaaacagcttattcattccagttctttgccgatc
tcagagatcgcttttgctagcggatttcagagtatcagacgattcaatgatgcatttaag
aaggtgatcaagttaacgccgagtcaggttcgtaaggacgagcaagctcaaacggaggtc
agctatatcgatcttgcgtttaaaggtgcgttagattggcaacatatgttggacttttat
cggctcagggcgattgagggaatcgaatccatagatgatgtcagctaccaacgttcgttt
acgatcgcgaataacccaggctggtttaagatttatccagtaaaaacaggcgtgatgagg
gtcgagtttaacttagaggatacccgccaacttaaaacgttggtgaatcagctaaggcgg
atgtttgatttagataccgatatcctgcacatcgagcagcaactgagtcaacttgcgcct
cagtttatcgagcgtactggcattcggattccgggcgtctggagcacttgggaagcggga
gtacgcgcaattttaggacagcaggtctctatcaaagcggcaattggtcagctgaaccta
ttagttcacactctgcagccaaatggcgctagccactttccaacgccagaggaagtgagc
caagcggacttaagctttcttcgaatgcctcaaagccgaaaagagacgttggcgcgtttt
gctcgctttgtgactgagaatccagaaagcacgcccgagcaatggctacagattaaaggg
ataggcccttggacagtgaattatgcacgtttaagaggggcgtctgagccaaactgtttt
ttagccggcgatctagtggtgaagaaagcgatagagaagtttccttccattaccactgac
agcgtgtctccatgggggagctacgccacttttcattgttggagtcacgcatga
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