Vibrio kanaloae: BTD91_01505
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Entry
BTD91_01505 CDS
T07086
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vka
Vibrio kanaloae
Pathway
vka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTD91_01505 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vka03019
]
BTD91_01505 (rne)
03009 Ribosome biogenesis [BR:
vka03009
]
BTD91_01505 (rne)
Enzymes [BR:
vka01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BTD91_01505 (rne)
Messenger RNA biogenesis [BR:
vka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BTD91_01505 (rne)
Ribosome biogenesis [BR:
vka03009
]
Prokaryotic type
rRNA processing factors
BTD91_01505 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QPK04662
LinkDB
All DBs
Position
1:370656..373796
Genome browser
AA seq
1046 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLKEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERA
QAHIQLIRPDFMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVES
RLRDAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETP
HFEVIRVREGEEFDLLSYLLPNKLEALKEAESKEPAEQTVRPKKLEEPALKGFAAPAQSA
PSPSSDPAPKAVEKKAEPATTQEPGLIGRFFKAIGSFLFSSAAQEEKQEAQEEKKEEEKP
KNNRNNGNRQRRDRNDNRRRNQRGERSERGDNRNENRDNKRRRKPARDEKPEEQKEVAPQ
QNRQPRKPKQDRRNKPRDEHKQREEQAPSKLAEEGLQLAAEAQADKPEVPKAKPEAKAAK
IKERRQRRKLNKQVRVKDQQAQAEDNASKEQVIAKEQSVSKEQSVAQEQKVAEQVEATQA
NAEQTEQEEPKQRRNRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPR
FIPKPHHKQAKPEVAEVQVAVEAQTSVQEQNVALETVPQSNVAMAGGFACPELAMGKVII
RREDAVIAEEVATEPKVEAPAVVEEAPVVVETAKVEAPVIAETTKVEAPVVAEAVQAEAA
PVVEAEAPKAESAKVEKAPVVKAEAPKAAVAKKQAGSPMTKAPGPQEIKEIEVVAAPFRA
ERFVSKGAGSQAASNKAGAAMTKPNY
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctttggttgac
ggccagcgactgttcgatctcgatatcgaaagtccaggtcacgagtcaaaaaaagcgaat
atctacaaaggacgtattacccgtattgaaccaagcctagaagcggcatttgttgattac
ggcgcagaacgtcacggtttcctccctcttaaagaaattgcccgcgaatacttccctgaa
ggttatacataccaaggccgtcctagcattaaagaagtgctaaaagaaggccaagaagta
atcgtacaagtagagaaagaagaacgtggtagcaaaggtgctgcactgacaactttcatc
tctttggctggtagttacttagttcttatgcctaataaccctcgtgctggcggtatttct
cgtcgtatcgaaggtgatgaacgcactcaactgaaagcagcattaagcactcttgagctt
cctcaagggatgggcttaatcgtgcgtacagcgggtgttggcaaaagtgcagaagagcta
gaatgggacctgaatgttctcttgaaccattggggcgctatcaagcaagcttctgattca
aatgcagctcctttcctaattcaccaagagagtaacgttattgttcgcgcaattcgtgac
tacctacgtcgtgatattggcgagattctaatcgacagcaatactatttttgaacgtgca
caagcgcacattcaattaatacgcccagatttcatgaatcgcgttaagaaatacgatggt
gaagtaccactattcagccattaccagattgaaagccagatcgaatctgctttccaacgt
gaagttcgccttccatctggtggttctatcgtaatcgacccaacagaagctctgacttct
atcgatatcaactctgctcgtgcaacaaagggcggcgatattgaagaaacagcgctaaac
accaacctagaagcggccgatgaaattgcacgtcaattacgtctacgtgatctaggtggt
cttgttgtaatcgactttatcgatatgactccggttcgccaccaacgcgaagtagagagc
cgtctacgtgatgccgttcgtttagatcgcgcacgtgttcagattggtcgtatttctcgc
tttggtctcctagagatgtcccgccaacgtttgagcccatcattagcagaagcaagccac
cacatttgtcctcgttgtacaggtactggtgttgttcgtgataacgaatcactagcactg
tctgttctacgtctaattgaagaagaagctctaaaagacaacactgcgcaagttcttgct
gtagtccctgttcctatcgcttcttacctattgaacgagaaacgtcgctcagtaaatcac
atcgagaagaaccaagaagttaagatcactgttgtacctaactctgacatggaaacacca
cattttgaggttatccgtgtacgtgaaggtgaagagttcgatctactgtcttacctactg
cctaacaagctagaagctctaaaagaagcggaaagcaaagaaccagcagaacagactgtt
cgtcctaaaaagctcgaagagccagctctgaaaggttttgcagctccagctcaatcagca
ccatctccatcttcggatccagcacctaaagcggtagagaagaaagctgagccggcaacg
actcaagaaccaggcctgattggtcgtttcttcaaagcaatcggtagcttcctctttagc
tctgcagctcaagaagagaagcaagaagcacaagaagagaaaaaagaagaagaaaaacct
aaaaacaatcgaaacaacggcaatcgtcagcgccgtgatcgtaacgataaccgtcgtcgc
aaccaacgtggtgaacgtagcgagcgtggtgacaatcgtaacgaaaaccgtgacaacaaa
cgtcgtcgtaagccagctcgtgacgagaagcctgaagagcagaaagaagtagctccacag
caaaatcgtcagcctcgtaagcctaagcaagatcgtcgtaacaaaccacgcgatgagcat
aagcaacgcgaagagcaagctccatctaaattagcagaagaaggtctacagctagcggca
gaagctcaagctgataaaccagaagtgcctaaggctaagcctgaagcgaaagcggctaag
attaaagagcgtcgtcagcgtcgtaaactgaacaagcaagttcgtgttaaagaccagcaa
gctcaagctgaagataatgcttcaaaagagcaggttattgctaaagaacaatctgtttca
aaagaacagtcagtagctcaagagcaaaaagttgcggaacaagtagaagcaactcaagcg
aatgcagagcaaactgaacaggaagagccgaaacaacgtcgtaaccgtcgttctccacgt
cacctacgtgcaagtggtcaacgtcgtcgtcgcggtcgtgatcgtcgccctaacccattc
cgcctacgtaaaggtggtgtagcttctccagagatggcgatgggtaaagtaatgcctcgc
ttcattccaaaacctcaccacaagcaggcaaaacctgaagtagctgaagttcaagtagca
gttgaagctcaaacatctgttcaagagcagaatgttgctctagagacggtaccacaaagc
aatgtagcaatggctggcggcttcgcatgtccagagcttgcaatgggtaaagttatcatc
cgtcgtgaagatgctgttattgctgaagaagtggctactgaacctaaggttgaagctcct
gcagtcgttgaagaggcacctgtggttgttgaaactgcgaaagttgaagctccagtgatt
gcagaaacgacgaaagttgaagcgcctgttgtagcagaagctgtgcaagcagaagcagca
ccagttgttgaagctgaagcgcctaaagctgaaagtgcaaaagttgaaaaagcacctgtt
gtgaaagcagaagctccaaaggcagcggttgctaaaaagcaagcaggttcaccaatgact
aaagctcctggtccacaagagatcaaagagattgaagttgttgcagctccgttccgcgct
gagcgctttgtatcgaaaggtgcaggcagtcaggcagcgtcgaacaaagctggcgcggcg
atgactaagccaaactactag
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