Vibrio kanaloae: BTD91_02420
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Entry
BTD91_02420 CDS
T07086
Name
(GenBank) DNA ligase
KO
K10754
replication factor C subunit 1
Organism
vka
Vibrio kanaloae
Pathway
vka03030
DNA replication
vka03410
Base excision repair
vka03420
Nucleotide excision repair
vka03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BTD91_02420
03410 Base excision repair
BTD91_02420
03420 Nucleotide excision repair
BTD91_02420
03430 Mismatch repair
BTD91_02420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vka03032
]
BTD91_02420
03400 DNA repair and recombination proteins [BR:
vka03400
]
BTD91_02420
DNA replication proteins [BR:
vka03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
BTD91_02420
DNA repair and recombination proteins [BR:
vka03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
BTD91_02420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
5_3_exonuc
SDE2_2C
Motif
Other DBs
NCBI-ProteinID:
QPK04833
LinkDB
All DBs
Position
1:complement(578175..579044)
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AA seq
289 aa
AA seq
DB search
MDVIPQIVAVVQDRRPATATDIVFPDACPVCSSAVERVEGEAVARCTGGLVCQAQRKEAL
KHFVSRKALDVDGLGVKVIEQLVDREMVETPADLFKLSAGVITVLDRMGPKSAQNVVSAL
NKAKETTLARFLYSLGIREVGEATAMNLAQHFKTLELVQAATHEQLVEVSDIGNIVASHI
TGFFSQEKNRAVIDQLVELGVNWPQLEEAADDQELPLEGKVVVLTGSLSQLGRSEAKAAL
QALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIRTEEDLIALIS
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
ttggatgtgattccgcaaattgtggccgttgtacaagatcgccgcccagctacggcgaca
gacattgttttccctgatgcttgccctgtatgtagttctgccgttgagcgtgtcgaaggt
gaggctgttgcgcgttgtactggtggtttggtgtgtcaagcacagcgaaaagaagcgctt
aaacactttgtttcgagaaaggctctcgacgttgatgggctgggcgtgaaagtaatagaa
cagcttgtagatcgcgaaatggtcgaaactccagcagacttgtttaagctcagtgcaggc
gtgattacggttcttgaccgaatggggcctaagtcagcacaaaacgtggtgagtgcgctt
aataaggccaaagagacgacattagcgcgttttctttattcactcggtattcgtgaagta
ggtgaagcaacggcaatgaacctagcgcagcacttcaagacgctagagctggttcaagcg
gcaactcacgagcagttagtcgaagtgtcagatattggtaacatcgtcgctagccatatc
acaggtttcttttcacaagagaaaaacagagcagtaatcgaccagctagtagagcttggt
gtgaactggccacagctcgaagaggctgccgatgaccaagaactaccattagaaggtaag
gtcgttgtgttaacaggctcactctctcaacttggtcgaagtgaagctaaagctgcatta
caagcgctaggggcgaaagtaacgggcagcgtatctaagaaaaccgacatcttattcgct
ggtgaagcggcaggttctaaactaactaaagcacaagatttaggtatcgaaataagaaca
gaagaagatctaattgcccttatttcgtaa
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