KEGG   Vibrio kanaloae: BTD91_03890
Entry
BTD91_03890       CDS       T07086                                 
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
  KO
K05590  ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
Organism
vka  Vibrio kanaloae
Brite
KEGG Orthology (KO) [BR:vka00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vka03009]
    BTD91_03890 (srmB)
Enzymes [BR:vka01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BTD91_03890 (srmB)
Ribosome biogenesis [BR:vka03009]
 Prokaryotic type
  rRNA helicases
   BTD91_03890 (srmB)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_11 Helicase_C_2
Other DBs
NCBI-ProteinID: QPK05104
LinkDB
Position
1:901785..903050
AA seq 421 aa
MIRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGKDVLASAPTGTGKTASFVLP
ALQYLQDFPRKKAGPARMLILTPTRELAMQITEQARELAKYTALNIFTITGGVMYQEHAD
ILGTTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRLSAECRWR
KQTLLFSATLEGKGVEGFTEDLLKNPAEIDAKSSLRERKKITQWYHRADTAEHKLELLKH
IITKEAERSIVFLKTRDRLGDLRAQLESAQIPCAWIQGEMPQDRRNNAIARFRDGSVNVL
LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSIIEAHDQLMIER
VARYTDEAIKERFVEGMRPTHKKAAVTKKKKPKKEDKKAVEKQKIAKKKKIAKKKKAVKN
K
NT seq 1266 nt   +upstreamnt  +downstreamnt
gtgatcagaacctttgcagaactcgatctaaaccaagagctgctaaaagcaattgacgaa
atgggctacgaacgcccaacacagatacaagctgaagcgatcccacaagcgttagatgga
aaagacgttttggcttctgcgccaacaggcactggtaaaacagcatcatttgttctgcca
gcgctacagtacttacaggatttccctcgtaaaaaagcggggcctgcccgtatgcttatc
ctgacaccaactcgtgaactggcaatgcaaatcactgagcaagctcgtgagctagcaaag
tatacggcactaaacatcttcaccatcaccggtggtgtaatgtaccaagagcacgctgat
atccttggcacaacgcaagacatcgtagttgcaactccaggtcgcctgatggaatacatc
gaagcagagcgctttgactgtcgtgctatcgaatggctaatcttagatgaagccgaccgc
atgttagatatgggctttggtcctgttgttgaccgtctgtctgcagagtgtcgctggcgt
aaacaaactttacttttctcagcaacactagaaggtaaaggtgttgaaggcttcactgaa
gatctactgaagaacccagcggagatcgatgcgaaatcatcacttcgtgagcgcaagaag
atcactcagtggtatcaccgtgctgacacagcagaacacaaacttgaattgctaaaacac
atcattaccaaggaagctgaacgcagcatcgtgttcttgaagacgcgtgatcgcctaggt
gatctacgagctcaacttgaaagtgcgcaaatcccatgtgcatggatccaaggcgaaatg
cctcaagaccgtcgtaacaatgcgattgctcgtttccgtgacggttctgtcaacgtattg
ctagcgactgacgttgctgctcgtggtatcgaccttcccgacgtaagccacgtaatcaat
tacgatatgcctcgtacggctgacgtctaccttcaccgtattggccgtacagctcgtgct
ggtaagaaaggcaacgcggtttctatcatcgaagcgcacgatcaactgatgattgaacgt
gtggctcgttacactgacgaagcaatcaaggaacgctttgttgaaggcatgcgtccaaca
cataagaaagcagccgtaacgaagaaaaagaaaccaaagaaagaagataagaaagcggta
gagaaacagaagatcgcgaagaagaagaaaatagctaagaaaaagaaagcggtaaaaaac
aagtaa

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