Vibrio kanaloae: BTD91_10005
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Entry
BTD91_10005 CDS
T07086
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vka
Vibrio kanaloae
Pathway
vka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTD91_10005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vka03019
]
BTD91_10005
03400 DNA repair and recombination proteins [BR:
vka03400
]
BTD91_10005
Enzymes [BR:
vka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BTD91_10005
Messenger RNA biogenesis [BR:
vka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BTD91_10005
DNA repair and recombination proteins [BR:
vka03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BTD91_10005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QPK03609
LinkDB
All DBs
Position
1:complement(2240581..2242515)
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AA seq
644 aa
AA seq
DB search
MIEQKLKQVFGFDSLRNGQKQVIDNVLSGHSTAAIFPTGSGKSLCYQLPALELPHLTLVI
SPLLALMKDQLAFLHSKGISAAAIESSQDRQTTQQVMQSVRNGDTKILMISVERLKNERF
RQFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPQYQKQLNIPQVLLLTATATTSVIQD
MKSKFEIDEERVVVTGFYRQNLDLSIQPCEQTSKLETLCNVVNQASLAPTIVYVTLQQTA
EMVAQQLRNAGVNAVAYHAGLKPENRDAIQHQFMNDEVSCIVATIAFGMGVDKSNIRRVI
HFDLPKSIENYSQEIGRAGRDGQASECILLANKHGLSTLENFVFGDTPDNISIQAVLKEI
YENQNIGASGSNQWEIMLNQLSRESNIRQLPLKTLLVYLEIEGVIEPKYSYFADYKFKFI
RPKQQITEQFQSERRQIVEAIFQCSPQARVWCQVDFDALWTHFQADRQRVIAAIDYFNEQ
GWIELESKQITDVYAIHNTSEDMMQLSERLTELFKAKEHSEINRLNQMLNFFEADTCLSS
RLASYFADDKVPTKCGHCSVCRDQVAMLPTVDVEPIDDETVIKWIHEFVSKSQQLITDEA
ITRFLCGIATPLSTKLKASKMIGYGKLEQQPFSDTLARVKQLPR
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgattgagcagaagctaaaacaagtattcggattcgactcactgcgtaatggacaaaag
caagtcattgataatgttctatctggtcactcgactgccgcgatattcccgacaggctct
ggtaaatctctgtgctatcaattaccagcattagagttaccgcacttaaccttggtaata
tcgccgctgttagccttgatgaaagaccaactcgctttcctgcacagtaaaggtattagc
gcagctgcaatcgaatccagccaagacagacaaaccacacaacaggttatgcagtcggta
cgtaacggtgacaccaagatactgatgatctccgttgagcgcttgaagaacgaacgcttt
cgccagtttatctcccaagtgccaatctcactgcttgtggtcgatgaagcgcactgtatt
tcagaatggggacacaacttcagacccgattacctgaagcttcctcaataccaaaagcag
ctcaatattcctcaggttctactactgacagccaccgcaaccacctcggttattcaagac
atgaagtcaaagtttgaaattgatgaggagcgcgtggtagtgacggggttctatcgtcaa
aacctcgacctgtcgattcaaccttgcgaacaaaccagcaagctagaaaccttgtgcaat
gtcgttaaccaagcttctctcgctccgactattgtttatgtcacccttcaacaaacagca
gagatggtggctcagcaacttcgtaacgctggcgttaatgccgtggcttaccatgcgggt
cttaagcctgaaaaccgagatgcaattcaacatcaattcatgaatgatgaagtgagctgt
atcgtggcaaccattgcttttggtatgggcgtggataagtccaacattcgccgagtgatt
cactttgacttaccaaagtcgatagaaaattactcgcaagagatcggcagagctggccga
gacgggcaagcgtctgaatgtattctactcgctaacaaacatggtttaagcacactcgag
aacttcgtttttggtgatacgccagacaacatatctatccaagcggtattaaaagagatc
tacgaaaatcaaaacattggcgcttctggctcgaatcaatgggagatcatgcttaaccag
ctatcacgtgagtccaacattcgtcagttaccgctaaaaacactactggtgtatcttgaa
attgaaggcgtgattgagccgaagtacagctactttgctgattacaaatttaagttcatt
cgtccgaaacagcagatcacagagcaatttcaaagtgaacgtcgtcaaattgtcgaagcg
atcttccaatgttcacctcaagctagagtgtggtgccaagtcgacttcgatgcgctttgg
actcacttccaagcagatcgccagcgtgtgattgcggctatcgactacttcaatgaacaa
ggttggattgaactagaaagcaagcagatcaccgatgtctacgcaatccacaatacttct
gaagatatgatgcaactgtcagagcgccttactgagttgtttaaagcaaaagagcacagc
gagataaaccgccttaaccaaatgctgaatttctttgaggcagatacttgcttaagctca
cgccttgccagttactttgccgatgacaaagtccctaccaaatgtggacactgttcagta
tgtcgagatcaagtcgcaatgttacccactgttgatgttgaaccaattgatgatgagacg
gtgataaaatggattcatgagtttgtatcgaagagccaacaattgattaccgacgaagcc
attactcgttttctatgcggaatcgccactccgctttcaaccaaacttaaagcgagcaag
atgatcggttacggcaagctcgaacaacaaccattcagtgataccttagcgcgagttaaa
cagcttcctaggtaa
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