Vibrio kanaloae: BTD91_12620
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Entry
BTD91_12620 CDS
T07086
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vka
Vibrio kanaloae
Brite
KEGG Orthology (KO) [BR:
vka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vka03019
]
BTD91_12620 (hrpA)
Enzymes [BR:
vka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BTD91_12620 (hrpA)
Messenger RNA biogenesis [BR:
vka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BTD91_12620 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
ResIII
AAA_22
ABC_tran
T2SSE
nSTAND3
NACHT
SLFN-g3_helicase
PhoH
AAA_30
TsaE
NTPase_1
RsgA_GTPase
LYTB
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QPK04080
LinkDB
All DBs
Position
1:2805383..2809453
Genome browser
AA seq
1356 aa
AA seq
DB search
MTSSPEKADKNNDTANQSHAANSNATPDSSANQVKQNPKQNQQPKQQAPKASASQNTPAS
LRKALNECMMRDRFRLSKRISGASRIKNEQSKHVVFDEIALDIAKSMMTATQRAAQKPTI
EYPEILPVSQKREDIAEAIAENQVVIVAGETGSGKTTQLPKICSELGRGRFGLIGHTQPR
RLAARSVANRIAEEMETQLGEFVGYKVRFNDQISDNTQIKLMTDGILLAEIQHDRFLNQY
DTIIIDEAHERSLNIDFIMGYLKELLPKRPDLKVIITSATIDPERFSKHFNNAPIIEVSG
RTYPVDTRYRPLGGDESDSDRDQIEGIFEAVDELCDEGSGDILIFMNGEREIRDTADALS
KRNLRDTEVVPLYARLSAGEQNRIFQSHTGRRIVLATNVAETSLTVPGIKYVIDPGTARI
SRYSYRTKVQRLPIEPVSQASANQRKGRCGRVAEGICIRLYSEEDFESRPEFTDPEILRT
NLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLLEELGAIATAGPAANKNKTQGDD
KKKLTAIGRKLAKLPIDPRLARMVIEAPRNRCLHEVMVIASALSIQDPRERPSDKQQSSD
DKHKRFFDKESDFITFVNLWDYIKQQQKALSSNQFRKQCKQDYLNYLRIREWQDVYFQIH
QAMRELDTKLNDEPGSYDGIHMSLLSGLLSHIGMKDQEKNEYQGARNARFHIFPASGLFK
KQPKWIMSAELVETSKLWGRVIAKIQPEWIEPLAKHLIKRSYSEPHWSKKQAAVMAHEKV
MLYGIPIIPKRLVNYGAIDATVSRELFVRSALVEGEWETKHAFFKQNRKLLQEVEELEHK
SRRRDILIDDDELFDFYDQRVGEEAVSGRHFDTWWKKTSQKTPELLNFEKSMLFRGDASH
VTDLDYPNFWHQNGIKLKLSYQFEPGDDNDGVTVHIPLPILNQIDQNGFDWQIPGLRQEL
VISLIKSLPKTLRRNFVPAPNYADAFLARVTPLEAPLLDSLEKELRRMTGVEVVREDWKL
DQIPEHLKVTFRAVDHRKRKLKEQKDLHDLKESLKDKVQETLSKVADDDIEQQNLHTWSF
GELPKVYQQKRGGYDVKAFPALVDTKDSVEIKLFETEQEQISAMKSGQRRLILLNVPSPI
KYLHSNLPNKSKLGLYFNPYGQVLDLIDDCIACGIDKLIEEKGGLVWEPEQFEALKEHVR
AELGDTVVEIAQQVETILTTAFSISKKLKGRVDLSMAFALSDIKAQVEGLIFKGFATECG
WKRLPDILRYMKAIERRMEKLPIDPNKDRLHMIKVESVMNDYKELLNKIPKGIAVPENVK
EVRWMIEELRVSFFAQQLGTPYPVSDKRVKNAIDAC
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
gtgacttcgtctccggaaaaagcagacaaaaacaacgatactgcgaatcagagccatgcc
gcgaattcaaacgcgacacctgattcctctgcaaatcaagttaagcaaaacccaaaacaa
aaccaacaaccaaagcagcaagcacccaaagctagcgcatctcaaaataccccagcctcg
cttcgtaaggcattaaatgagtgcatgatgcgcgatcgcttccgtttaagtaagcgcatc
tctggtgcaagccgcattaagaatgaacaatccaagcacgttgttttcgatgaaattgca
ttagatattgccaagtcgatgatgacggcaacccagcgcgctgcacaaaagccaacgatt
gaatatccagagattctccctgtcagccaaaagcgcgaagacatcgcggaagccattgct
gaaaaccaagtggttatcgtggcgggtgaaacaggctcgggcaaaaccactcagttacca
aaaatctgttctgaacttggccgtggccgctttggcctaattggtcacactcagcctcgt
cgtcttgcggcgcgttcggttgccaaccgtattgctgaagagatggaaacacaactgggt
gagtttgttggttataaggttcgattcaacgaccagatttctgataacacccaaatcaaa
ttgatgaccgacggtattctactggcggagattcaacacgaccgtttcttaaatcagtac
gacaccatcatcatcgatgaagcgcacgaacgtagcctgaacatcgatttcatcatgggt
tacctgaaagagttgctaccgaagcgtcctgatctcaaagtgatcatcacgtcggcaacc
attgaccctgagcgtttctctaagcacttcaacaatgcgcctatcattgaagtttctggc
cgtacctacccagttgatacgcgttaccgcccattagggggggatgaaagtgattcagac
cgcgaccaaatcgaaggcatctttgaagcggttgatgagttgtgtgatgaaggttctggc
gatatcttgatcttcatgaacggtgagcgagaaattcgtgataccgcagatgcgctaagt
aagcgtaatctgcgtgatacagaggttgttccgttgtatgcgcgcttgtcggcgggtgaa
cagaaccgtatcttccagtcccacactggtcgacgcatcgttctggcaaccaacgtggca
gaaacctcgttaaccgttccgggcatcaagtatgttatcgacccgggtacggcgcgtatc
agccgctacagctaccgaactaaagtacaacgcctaccgattgagccagtatctcaagcg
agtgctaaccagcgtaaaggtcgttgtggtcgtgttgcggaaggtatctgtattcgcctg
tactctgaggaagatttcgagtcacgcccagagtttaccgatccagagattcttcgtacg
aacctagcatcggttatccttcagatgacagccttaggtctaggcgacattcaagccttc
ccatttgttgaagcgccagataagcgtaacattcaggacggtgtaaggctgcttgaagaa
ctaggtgctatcgcgacagccgggcccgccgcgaacaaaaacaagactcaaggcgacgat
aagaagaagctaacggcgattggtcgtaaattggctaagttgccgattgatccgcgtttg
gctcgtatggtaattgaagcgccacgcaaccgatgcttgcacgaagtcatggtgattgcg
tctgcattgtcgattcaagatccgcgtgagcgtccatcagacaagcagcaatcgtctgac
gataagcacaagcgcttcttcgataaagagtcggacttcatcacgtttgtgaacctatgg
gattacatcaagcagcagcaaaaagcgctgtcgagtaaccagttccgcaaacagtgtaaa
caagattatctgaactatttacgtattcgtgaatggcaagatgtatatttccaaattcac
caagcaatgcgtgaattggataccaagttgaacgacgaaccgggcagctacgatggtatt
cacatgtcgctgctatcaggtttgctttcgcacatcggcatgaaagaccaagagaagaat
gaatatcaaggtgctcgtaacgcacgcttccatatcttccctgcgtctggcttattcaag
aagcagcctaagtggatcatgtctgctgagctggtggaaacctcaaaactatggggtcgt
gttatcgcgaagattcaaccggaatggattgaacctttggcgaaacatctgatcaagcgc
agctacagcgaaccacactggtcgaagaagcaagcggcagtaatggctcacgagaaagtg
atgctctacggaatcccaatcattccgaaacgtttggtgaactacggagcgattgacgca
accgtcagccgtgagttgtttgtgcgtagtgcattagtagaaggtgagtgggaaaccaaa
cacgccttcttcaagcagaaccgtaagcttctacaagaagtcgaagagctagagcataag
tcacgtcgtcgtgacatcttgatcgacgatgatgaactgttcgatttctatgaccagcgt
gtaggtgaagaggcggtttcaggccgtcactttgatacatggtggaagaagactagccag
aaaacacctgagctgcttaactttgaaaagtcgatgctgttccgaggcgatgcaagccac
gttactgatttggattacccgaacttctggcaccaaaacggtattaagttgaaactgagc
taccaatttgagccgggcgacgacaatgatggtgtaacggtacacattccgctgcctatc
ttgaaccaaatcgaccagaacggttttgattggcagatcccaggcttacgccaggaattg
gtgattagtttaatcaagtcactgcctaaaacgctacgccgtaactttgtgcctgcgcca
aactacgccgatgcgttcttagctcgtgttacaccacttgaagcgccactgttggactct
cttgagaaagaactgcgccgcatgacaggtgttgaagtagttcgtgaagactggaagtta
gaccagataccagagcacttaaaggtaacattccgtgctgtcgatcatcgcaagcgcaag
ctaaaagaacagaaagacctgcatgatctgaaagagagcttgaaagacaaggttcaagaa
acgctttctaaagtggcagacgatgatatcgaacaacagaacctgcatacgtggagcttt
ggtgagttaccaaaagtctaccaacagaagcgtggtggctacgatgtgaaagctttccct
gcgctggtggatactaaagacagcgtcgagatcaaactgttcgaaaccgagcaagagcag
atctcagcaatgaagtcgggtcagcgtcgtttaatcctgttgaacgtgccatcaccgatc
aaatacttgcactcgaacctgccgaacaaatcgaaacttggcctgtactttaatccatac
ggacaggtgctcgatcttatcgatgactgtatcgcttgtggtattgataagctgattgaa
gagaagggcggtttggtttgggaaccagagcagtttgaagcactgaaagaacacgtacgt
gcagagctgggtgatacggttgttgagattgctcaacaggttgaaaccatcttaaccacg
gcattcagcatcagtaaaaagctgaaaggtcgtgttgatctttctatggcattcgcactt
tctgacataaaagctcaagtagaaggtttgatttttaaggggtttgccacagaatgtgga
tggaaacgcttgccagatattctacgctatatgaaggcgatagaacgccgcatggagaag
ctgccgattgacccgaacaaagatcgcttacacatgatcaaagttgagtcagtaatgaac
gattacaaagagctgttgaataagattccaaaggggatcgcggttccagaaaacgtgaaa
gaggtgcgttggatgatagaagagcttcgtgtaagcttcttcgctcagcagcttggtacg
ccttacccggtgtcagataagcgtgttaaaaacgcgattgatgcttgctaa
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integrated database retrieval system
