Varanus komodoensis (Komodo dragon): 123022281
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Entry
123022281 CDS
T07701
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
vko
Varanus komodoensis (Komodo dragon)
Pathway
vko03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123022281 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vko03041
]
123022281 (DHX38)
Enzymes [BR:
vko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123022281 (DHX38)
Spliceosome [BR:
vko03041
]
Complex C
Other components
Step II factors
123022281 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
nSTAND3
Flavi_DEAD
PhoH
SRP54
AAA_30
AAA_16
AAA_7
Microtub_bd
Motif
Other DBs
NCBI-GeneID:
123022281
NCBI-ProteinID:
XP_044283833
Ensembl:
ENSVKKG00000014568
UniProt:
A0A8D2LHI5
LinkDB
All DBs
Position
Unknown
AA seq
1242 aa
AA seq
DB search
MEDVPGEAALHRLEGLAPETQAGGLLIRKKSASEEQHVFKIPAPRTSLLGLDLLAAQKRR
EREERDIGGEDRKRSRVSSYKDWAEGKDDGAGGDEEDNDAVGHSSRKDRHYRSARVETPS
HTGGVSEEFWERSRQRERERREQGVYASSKEEKERKRDHGREREHDRKRDREERDRSRRS
SSRSERESSSERGGGGSNRRNEPESPRHRPKDAATPSRSSWEEEDSGYSGSRRSQWESPS
PTPSCRDPERSHRGSASRDSDRRDRDRSVRSKYPEETPLPTPSYKYNDWADNQRHLSTTP
WLSRGRGRREDGEDGIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLASSSEEYV
RKREQHLQKQKQKRISAQRRQINEDNERWETNRMLTSGVVQRLEVDEDFEEDNAAKVHLL
VHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKKAQHRHW
ELAGTKLGNLMGIKKEEEEEGPNQILAEDGTVDYKTEQKFADHMKEKSEASSEFAKKKSI
VEQRQYLPIFAVQQELLTVIRDNSIVIVVGETGSGKTTQLTQYLHEDSYTDYGMIGCTQP
RRVAAMSVAKRVSEEMGVSLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDH
YSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIP
GRTFPVDVLFSKTPQEDYVEAAVKQALQVHLSSAPGDILIFMPGQEDIEVTSEQIVEHLE
ELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGY
CKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPE
IQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRL
MVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPE
SDHLTYLNVYLQWKNSSYSSLWCNEHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTD
WDVVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYVVYHELVMT
TKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQESRRRAKEEASAMEEEMALAEEQLRA
RREEQERRNPVGSVRSTKIYTPGRKEQGQPATPRHTPARFGL
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgtgcccggggaggccgcgctgcaccgcctggagggcctggctccggagacg
caggcgggcggcctgctcatcaggaagaaaagcgcctcggaggagcagcatgtcttcaag
atcccagcgccgcgcacttcgctgctgggcctcgacctgctggccgcccagaagcgccgc
gagcgcgaggaacgagacattggtggcgaggaccggaagaggtcccgcgtctcctcctac
aaggattgggcggagggcaaggatgatggggcaggtggtgatgaagaggacaatgacgca
gtggggcacagcagccgcaaggacaggcattaccgctctgctcgggtggagactccatcc
catactggaggagtcagtgaggagttctgggagcggagccggcagcgagaacgtgagcgt
cgagaacagggggtttatgcctcttccaaggaggagaaagagcgcaagagggaccatgga
cgggagcgggagcacgatcgcaagcgggatcgagaagagagagaccgaagtcgtcgcagt
agcagccggtcagagagggagagttcctcagagaggggcggtggtggcagcaatcgacgg
aatgagccagagagccctcgccaccgcccaaaagatgcagctacaccttctcgttccagc
tgggaggaggaagacagtggttatagcggttcccgccgttcccaatgggaatccccctcc
cccaccccttcctgcagggatcctgagcggagtcatcggggatctgcttcccgtgatagt
gacaggcgtgaccgtgaccggtctgtaagaagcaaatatccagaagagacgcccttgcca
accccttcgtacaagtacaacgactgggcagacaatcaaagacacttgagcacaacgccg
tggctctcccgagggagagggaggcgtgaggatggggaagatggtattgcctttgaaaca
gaggaggagcggcagcagtgggaagatgatcagcggcaagctgaccgagattggtacatg
atggacgagggctacgatgaattccacaacccactggcctcttcgtcagaggagtacgtg
aggaagcgggagcagcacttgcagaagcaaaagcagaagcgtatctcggctcagcgcagg
caaatcaatgaggataatgagcggtgggagacgaaccgcatgctcacgagtggcgtggtg
cagcgcctggaagtggacgaggactttgaggaggacaacgctgccaaggtccacctcctg
gtccacaatctggtgcctcccttcctggatgggcgcatcgtcttcaccaagcagcctgag
cctgtcatccccgtcaaagacgctacctcggacctggcgatcattgcccggaaaggcagc
cagctggtgcgcaagcaccgcgagcagaaggagcgcaaaaaggcacagcacaggcactgg
gagctggccggtaccaaactgggaaatcttatgggtatcaagaaggaggaagaggaggag
ggcccaaaccagattttagctgaggacggaactgtggattacaagacagagcagaagttt
gctgatcacatgaaagagaagagcgaggccagcagtgagtttgccaagaagaagtcgatc
gtggagcaaagacagtatttgcccatctttgcggtgcagcaggagctgctgactgtcatt
cgggacaacagcatcgtgattgttgtcggggagaccggcagcggcaagaccacgcagctg
acgcagtacctgcacgaggacagctacaccgactacggcatgatcggctgcacgcagccc
cggcgggtggccgccatgtcggtggccaagcgcgtcagcgaggagatgggcgtgagcctc
ggggaggaggtgggctacgccatccgctttgaggactgcacctcggagaacacggtcatc
aagtacatgacagacgggatcctgctgcgcgagtccctgcgggaagctgacctggaccac
tacagcgcgatcatcatggacgaggcccacgagcgctccctgaacacggatgtgctgttc
ggcctcctgcgagaggtggtggctcggcgctcagatctgaagctgattgtgacctcggcc
accatggatgcggagaagtttgctgctttctttgggaacgtgcccatcttccacatccca
ggccgcacgttccctgtcgacgtcctcttcagtaagaccccgcaggaggactacgtggag
gccgccgtgaagcaggccctgcaggtgcacctgtccagcgctcccggggacatcctgatc
ttcatgcccggccaggaggacattgaggtgacctcggagcagattgtggagcacctggag
gagctggagaacgcccctgccctggccgtgctgcccatctactcgcagctgccttctgac
ttgcaggccaagattttccaaaaggccccagatggtgtccggaagtgcattgtagccacc
aacatcgcggagacctcgctgaccgtggacgggatcatgttcgtgatcgactctggctat
tgcaagctgaaggtcttcaacccacggattggcatggatgccttgcagatctacccaatc
agccaggccaatgccaaccagcgctcgggccgagctggaaggacaggcccaggtcagtgt
ttcaggttgtacacccagagtgcgtacaagaacgagctgctgacaaccaccgtgccagag
atccagcgcaccaacctggccaacgtggtgctcctgctcaagtcgctgggggtgcaggac
ctgctgcagttccacttcatggaccctcctcccgaggacaacatgctcaactccatgtac
cagctgtggatcttgggggcactggacaacacaggtgggctgacctcaaccgggcgcctg
atggtggagttccccctggatccagccctctccaagatgctgatcgtctcctgcgacatg
ggctgcagctccgagatcctgctgatcgtctccatgctgtctgtgccagccattttctac
cggcccaaggggcgggaggaggagagcgaccaggtgcgggagaagtttgccgtcccggag
agcgaccacttgacctacctgaatgtgtacctgcagtggaagaacagcagctactccagc
ttgtggtgcaacgagcacttcatccacgccaaggccatgcgcaaggtgcgggaagtgcgg
gcccagctgaaggacatcatggtgcagcagcgcatgagcctggcctcgtgcggcacggat
tgggacgtggttcgcaagtgcatctgtgccgcttacttccaccaggccgccaagctcaag
ggcatcggggaatacgtcaacatccgcacgggcatgccctgccacctccaccccactagc
tcacttttcggcatgggctacacacccgactacgttgtctaccacgagcttgtgatgacc
accaaggagtacatgcagtgcgtcacggctgtggacggcgagtggctggctgagctgggg
ccgatgttctacagcatcaagcatgcggggaagtctcgccaggagagccgccggcgtgcc
aaggaggaggcctctgccatggaggaggagatggctctggcggaagagcagctgcgggcc
cgccgagaggagcaagagcgccgcaacccggtgggcagcgtgaggtccaccaagatctac
acgcccgggcgcaaggagcaaggccagcccgccaccccccgccacacgcccgcccgcttt
ggtctgtaa
DBGET
integrated database retrieval system
