Varanus komodoensis (Komodo dragon): 123024236
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Entry
123024236 CDS
T07701
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
vko
Varanus komodoensis (Komodo dragon)
Pathway
vko04510
Focal adhesion
vko04512
ECM-receptor interaction
vko04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123024236 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
123024236 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
123024236 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vko04147
]
123024236 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
vko00536
]
123024236 (COL4A1)
Exosome [BR:
vko04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
123024236 (COL4A1)
Glycosaminoglycan binding proteins [BR:
vko00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123024236 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
123024236
NCBI-ProteinID:
XP_044287591
LinkDB
All DBs
Position
Unknown
AA seq
1679 aa
AA seq
DB search
MGNCRSWTGLTLLFAALLLGPRRRLTAEAAAACFGCGKCDCSGVKGEKGERGLPGLQGLV
GFPGVQGPEGPPGYSGLKGDTGEPGLPGTKGTRGPPGPAGYPGNPGLPGIPGGDGPPGPP
GIPGCNGTKGERGPVGPPGLPGLPGNPGPPGPIGIKGDPGEVIGLIPNGILKGEKGVPGE
PGLPGSPGSPGINGPIGPPGPSGRPGPPGPPGPPGEKGHMGLSFQGPKGDKGERGVMGPP
GPQGAAPQMQEKGTIVIHGEKGDPGEKGDPGSPGSPGLSSKGEKGEPGKSGPQGRPGKDG
EDGEKGRPGEPGKPGFPGPHGTTGPKGDKGTAGPPGLPGIVISPGEEVIVGEKGDPGPQG
LPGAKGEPGQKGFSGLPGPPGPPGQPSPGLIGAPGFPGERGEKGDRGPPGHSLSGAKGND
GLPGPRGIPGPPGPAIVTDEMQACQPGQPGDPGPPGPPGQRGFLGERGEKGAKGEGCFTC
DVPGLPGSPGPQGLPGEPGITGLPGAKGDRGAPGFPGIPGMAGTPGDSGLIGSPGAKGEP
GDVFFDPNLKGDKGNPGFPGLPGTPGREGRPGKDGLPGAPGPKGASGTVGLKGDHGPPGV
RGFPGTPGDRGLPGPPGVGLAGPPGDKGEEGISGNPGTPGLPGPKGEAGHAIALPGPPGP
DGIPGTPGFPGIQGEKGDPGIPGRPGLPGEKGLTGLPGIGLPGPPGPPGFPGEPGTPGIT
GKKGDLGFQGPPGIPGLQGQKGEPGLGLPGPKGFPGPKGRDGLSGAKGDQGLPGIPGEKG
FPGVAGQPGLQGDPGPPGLPGLQGSPGIPGIGPPGPPGPPGQSGPQGPIGVPGIKGEKGY
PGIPGEHAPGPKGDKGSQGLHGLPGLQGLPGPPGPQGREGQPGVPGIKGEMGVMGTPGIQ
GPPGPIGSPGSPGEKGYSGLPGVAGIRGEPGLKGEKGETGLPGEPGSMEHVDMENMKGQK
GEQGNKGQHGPIGEKGTQGEPGTPGMPGKDGESGLPGPAGPKGDPGPPGYQGEPGYPGQK
GSIGEMGLPGQPGEKGVQGLPGETGKPGFPGVKGEKGSKGEPGLPGTGFPGAPGEKGEPG
RTGSPGTPGEKGEKGVPGIAGIPGSPGAKGQSGLPGSPGVPGIPGEKGEKGFPGLSGFPG
TKGETGDPGPQGPPGTPGGKGEPGYDGIPGLPGAKGDPGIPGRGLPGLPGTKGEKGSKGD
VGFPGSPGSPGIPGAKGELGFVGPQGPPGQPGIPGLPGRSIEGPKGDRGPQGQPGLQGLP
GPQGTPGVPGLSGTKGEKGSPGWPGPSGRPGSKGDQGSQGIPGNAGFPGAAGQKGDMGPP
GIPGPQGLKGSPGFQGLKGEQGDQGLPGAKGFPGPPGPPGPFQLLKGEPGLPGLVGPVGP
KGLPGPPGPKGQQGVTGAVGLTGPPGIPGFDGTPGQKGATGPFGPPGPRGFPGPPGPEGM
PGLMGPAGSPSVAHGFLVTRHSQTTEEPSCPSGTRLMFYGYSLLYIQGNERAHGQDLGTA
GSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIQPFISRCAV
CEAPAMVIAVHSQTVQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRS
APFIECHGKGTCNYYANAYSFWLATIERNEMFKKPTPSTLKAGELRSNVSRCQVCMRRT
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgggaaactgccggtcgtggacgggactcacgctcctgttcgccgcgctcctgctcggc
ccaaggcggcgcctgacggcggaggcggcagcggcttgttttggctgtggaaaatgtgac
tgtagtggagtaaagggggaaaagggagagcgaggtttgccaggtttacaaggtttggtt
gggtttcctggagtacaaggaccagaaggtccaccaggttattcaggactgaagggtgat
actggagaaccaggactaccaggaacaaaaggaacaagaggccctccaggtccagcaggc
tatccaggcaatcctggcctacccggcattcctggaggagatggccccccaggtcctcct
ggtattccaggatgcaatggaacaaagggtgaaagaggtcctgttggtcccccaggttta
cccggattacctggaaatccaggtcctccaggacctatcggaataaagggagacccagga
gaagttattggactcataccaaatggtatactaaaaggtgaaaaaggagttcctggcgaa
cctggattaccgggatcacctggatcaccaggcatcaatggccctattggaccacctgga
ccttctggaagaccaggtcctccagggccacctggtcccccaggtgagaagggtcatatg
ggtctgagtttccaaggaccaaaaggtgataagggtgaacgaggtgttatgggccctcct
ggtccgcaaggagctgctccacaaatgcaagagaaaggcaccatagttatacatggagag
aaaggtgatcctggtgaaaagggtgaccctggctctccaggatcaccaggcctaagcagc
aaaggggaaaaaggtgaacctggaaaatctggtccacagggaagacctgggaaggatgga
gaagatggagagaagggaagacctggagaacctggcaagccaggatttccaggaccacat
ggtacaactggcccaaaaggagataagggtacagcaggtcctccaggacttccaggaata
gttataagtccaggtgaagaagttatagtaggtgaaaaaggagatccaggtcctcaaggg
ctcccaggtgcaaaaggtgaaccaggtcaaaaaggtttttcgggtctgccagggccacca
ggtcctccagggcaaccaagtccaggattaataggggcacctggttttcctggtgagaga
ggagaaaagggtgaccgtggccctcctggacattctctgtctggtgcaaaaggaaatgat
ggattaccagggcctcgtggtataccaggacctccaggccctgctattgtaacagatgaa
atgcaggcatgtcagcctggccaacctggtgatccaggccctccaggccctcctgggcag
cgtggcttcttgggagagaggggagaaaaaggtgcaaaaggtgaaggctgctttacttgt
gatgtacctggccttcctggatcaccaggcccccaagggcttccaggagaaccaggtatt
actggactacctggtgctaaaggtgacaggggagcacctggatttcctggtattcctgga
atggcagggaccccaggtgattctggattgattggaagcccaggagcaaaaggagaacct
ggagatgttttctttgaccctaacttaaaaggtgataaaggaaatcctggtttccctggt
cttccaggtactcctggtagagaaggaagaccaggaaaggatggtctgccaggtgctcca
ggtcccaaaggggcatcgggtacggtggggttaaaaggagatcatggtcccccaggagta
agaggttttccaggaacccctggagatagaggccttccaggtcctccaggagttggactt
gctggaccacctggtgataaaggggaagaaggtatttcaggaaaccctggcacaccagga
cttccaggacccaaaggtgaagctgggcatgccattgctctgcctggtcccccaggacct
gatggtattcctggaactcctggatttccaggcatccaaggtgaaaagggagatcctggg
atcccaggaagacctggcctgccaggtgaaaaaggtctaacaggactaccaggaataggc
cttcctggccctccagggcctccaggtttcccaggtgagccaggcacaccaggcataact
gggaagaaaggagatctgggtttccaagggccaccaggtataccaggattacaaggtcaa
aagggtgaacctggactaggccttccaggccctaaaggttttcctggccccaagggacga
gatggtctttctggagcaaaaggcgatcaaggcttgcctggtataccaggagaaaaagga
tttccaggtgtagctggccagccaggactccaaggtgatcctggccctcctggattacca
ggtctacagggttcccctgggataccaggaataggtcctcctggccctcctggccctcca
ggacaatctgggcctcagggaccaataggagttccaggaataaaaggagaaaaaggctac
ccaggaattcctggagaacatgcgcctgggccaaaaggagacaaaggtagccaaggattg
catgggctgccagggctgcaaggattgcctggcccacctggcccacaaggacgagaaggg
cagccaggtgttccaggaatcaaaggagaaatgggagtgatgggaacccctggaatccag
gggcctcctggccctattggatctcctggtagtccaggtgaaaaaggttactcaggcctt
cctggagtagcaggaattagaggtgaacctggtttaaaaggtgaaaagggtgaaacaggt
ctaccaggagagccaggatcaatggagcatgtagacatggagaacatgaaaggccaaaag
ggagagcaaggaaataaaggacaacatggaccaataggcgagaagggaactcaaggggaa
cctggtacacctggaatgcctgggaaggatggggaatctggtttgcctggcccagcagga
ccaaagggagacccaggcccacctggataccagggtgaaccaggatatcctggacaaaag
ggatcaataggggaaatgggtctgccagggcagccaggagaaaagggtgtgcaaggtctt
ccaggtgagacaggtaaaccaggatttcctggtgtgaaaggcgagaaaggcagcaaagga
gaacctggacttccaggaactggctttccaggtgcccctggtgagaagggagaaccagga
aggacaggcagcccaggcacgcctggggaaaaaggtgaaaagggtgttccaggaattgcg
ggtatccctggttccccaggtgccaaagggcaatcaggtcttccaggttctccaggtgtt
ccaggtatcccaggtgaaaaaggtgaaaagggatttccaggcctgagtggttttccaggc
acaaaaggagaaacaggtgaccctgggccccaaggtccaccaggtactcctggaggaaag
ggtgaaccaggttatgatggaatcccgggcttacctggtgcaaaaggtgacccaggtatt
ccaggaagaggacttcctggacttccaggtacaaagggagaaaaaggttcaaaaggagat
gtgggcttcccaggatccccaggaagtccagggattcctggtgcaaaaggagaattagga
tttgttggtccgcagggtccaccaggccagccaggcattcctggattaccaggcagatcc
atagaggggccaaagggtgatcggggaccccaagggcaacctgggcttcaagggcttcct
ggaccacagggaactccaggtgttccaggcttatcaggaacaaaaggagaaaaaggaagc
ccaggctggccaggaccatctggaagaccaggatccaaaggtgaccagggatctcaagga
atccctggtaatgctggcttccctggagctgctggccaaaaaggtgacatgggacctcct
ggaattccaggtcctcaaggcctaaaaggttctccagggttccagggactcaaaggagaa
caaggtgatcagggactacctggtgctaaaggtttccctggaccaccagggcctccaggc
cctttccagcttctgaaaggtgaaccaggtttacctggtcttgtaggcccagttggcccc
aaaggacttcctgggcctccaggaccaaaaggacaacaaggtgtaacaggagctgtgggt
ttgactggtcctccaggcattcctggatttgatggaacacctggtcagaaaggagcaact
ggcccttttggtcccccaggtcctagaggctttcctggcccacctggtcctgagggaatg
ccaggattaatgggtccagctggcagtccttctgtagctcacgggttccttgtaaccagg
cacagccagaccacagaagaaccatcatgtccatctgggacaaggctaatgttctatggg
tattctttgctttatatacaaggaaatgaacgggcccatggccaggacttgggcacagcg
ggaagctgtctacgtaaattcagcacaatgccctttctgttctgtaacattaacaacgtc
tgcaattttgcctcaagaaatgattattcttactggttgtctactcctgagccaatgcca
atgagcatggcacccattacaggagacaacatccagcctttcatcagtaggtgtgctgtg
tgtgaagctcctgctatggtgatagcagttcacagtcaaacagttcaaattccaccatgc
ccggaaggctggagttccctgtggataggctattcctttgtgatgcacaccagtgctggt
gcagagggttcagggcaagcgctggcatctccaggctcctgtcttgaagagttccgcagt
gctcctttcatagaatgtcatggaaaaggcacctgcaattactatgctaatgcatacagc
ttctggcttgccactattgagagaaatgaaatgttcaaaaaacctactccttccacactg
aaagctggggaactacgttcaaatgttagccgttgccaagtctgtatgcgacgtacataa
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integrated database retrieval system
