Varanus komodoensis (Komodo dragon): 123024285
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Entry
123024285 CDS
T07701
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
vko
Varanus komodoensis (Komodo dragon)
Pathway
vko03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123024285 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vko03041
]
123024285 (SF3B1)
03036 Chromosome and associated proteins [BR:
vko03036
]
123024285 (SF3B1)
Spliceosome [BR:
vko03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123024285 (SF3B1)
Complex B
123024285 (SF3B1)
Complex C
U2 SnRNP specific factors
123024285 (SF3B1)
Chromosome and associated proteins [BR:
vko03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
123024285 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
123024285
NCBI-ProteinID:
XP_044287764
Ensembl:
ENSVKKG00000009776
UniProt:
A0A8D2Q0Z3
LinkDB
All DBs
Position
Unknown
AA seq
1302 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKN
RRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEV
KVVNGAASQPPSKRKRRWDQTADQTPGTTPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERD
TPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGT
PAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYRVLPPPAGYV
PIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDV
DESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSP
TLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAK
AAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARH
TGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIE
SFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDE
EMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELAN
KVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQE
QTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVM
KTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTP
ILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFG
YIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELN
VQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGF
GCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVR
DVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYVL
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaattcaaggc
aaaaaagctgcccttgatgaagctcagggagtgggccttgattctacaggatactatgat
caagagatttatggtggaagtgatagtaggtttgctggatatgtaacttcaattgcagca
actgaactagaagatgatgatgatgactactcttctacaagcttacttggccagaagaag
cctgggtaccatgcaccagtggcactgcttaatgatataccacagtcaactgaacagtat
gatccatttgctgagcatcgtccacaaaagattgccgatagggaagatgaatacaaaaat
cgcaggcggatgatgattatttctcctgaacgtctcgatccttttgcagatggagggaag
acacctgatcctaaaatgaatgccagaacatatatggatgttatgcgtgaacaacattta
acaaaagaagagagggaaattaggcaacaactagcagaaaaagcgaaggctggtgaagtt
aaggtcgtcaatggtgctgcatcccagccaccttcaaaacgcaaacggcgttgggatcag
actgctgaccagactcctggtaccaccccaaagaaactgtcaagttgggatcaagctgag
acccctggacatactccatctttgcgatgggatgaaacgcctggtcgtgcaaagggtagt
gagacacctggagcaacccctggttctaaaatatgggatccaactcccagccatacacca
gcaggagctgcaacacctgggcgtggtgatacacctggtcatgcaacaccagggcacgga
ggtgcaacttccagtgcacggaaaaacagatgggatgaaactcccaaaacagaaagagat
actcctgggcatggaagtggttgggctgaaacccctcgcactgatcgaggtggtgattcc
attggtgaaacaccaacccctggagcaagcaaaagaaaatcacgttgggatgaaacacct
gcaagccagatgggtgggagcactcctgtgttaacacccggcaaaacaccgattggcaca
ccagctatgaacatggcaacccctacaccaggtcatataatgagcatgactcccgaacag
cttcaggcatggcgatgggagagagaaatagatgaaagaaataggcccctttctgatgaa
gagctggatgccatgtttcctgagggatacagggttctccctcctccagctggttatgtc
cctattcgtactccagctcgtaaacttacagcaactcccacacctctgggtggtatgact
ggattccacatgcaaacagaagacaggaccatgaagagtgtcaatgaccagccctcagga
aatcttcctttcctaaaaccagatgacatacaatactttgataagcttctggttgatgtt
gatgaatcaacacttagtccagaggaacagaaagagagaaaaatcatgaaattgcttttg
aagatcaagaatggcacccctccaatgagaaaggctgcattgagacagattactgataag
gctcgtgaatttggagcgggtccacttttcaatcagattttaccacttctgatgtcacca
acacttgaagatcaagaacgccatttgcttgtcaaagttattgacagaattttatacaaa
ttagatgacttggtccgaccatatgtgcacaagattcttgtggtcattgaaccattattg
attgatgaggattactatgccagagtggaaggcagagaaattatttccaacttggccaag
gcagctggtctggctaccatgatctccaccatgcgacctgatattgataacatggatgaa
tatgttcgtaacacaacagctcgagcttttgctgttgttgcctctgctctgggcatacca
tctctgttgccctttttgaaagctgtgtgtaaaagcaagaagtcctggcaagccagacac
acgggtatcaagattgtgcaacaaattgctattcttatgggctgtgcaattttgcctcat
ctcaggagtctggttgaaattattgagcatggcttggtggacgaacagcagaaagtacgc
actattagtgctttagctattgccgctttagctgaggcagccactccttatggtatcgaa
tcctttgactctgtcctaaagcctctgtggaaggggatacgtcaacacagaggaaaaggt
ctggctgccttcttgaaagctattgggtaccttattccacttatggatgcagagtatgcc
aactactataccagggaagtaatgctaatccttattagagagttccagtctcctgatgaa
gaaatgaaaaagattgttttgaaggtagtaaagcagtgttgtggcacagatggtgttgaa
gcaaactacattaaaactgaaattttgcccccatttttcaagcacttctggcaacacaga
atggcactggacagaagaaattacagacagttggtcgacacaaccgtggagcttgccaac
aaagttggagcagcagaaattatttccaggatagtggatgatctgaaagatgaagctgaa
cagtacaggaaaatggttatggagaccattgaaaagatcatggggaatctgggtgcagct
gatattgatcacaagctggaagaacaacttattgatggcatcctgtatgccttccaagaa
cagaccacagaggattctgtgatgttgaatggctttggtacagtggtcaacgctcttggc
aagcgagttaaaccatacttgccccagatctgtggtacagttctgtggcgtttgaacaac
aaatcggccaaagtaagacagcaagctgctgatctgatatctcgtactgcagttgtcatg
aagacctgtcaagaggaaaaattgatgggacacttgggtgtagtcttgtatgagtacttg
ggtgaagaatatcctgaagtactgggcagtattttaggagcgcttaaagccattgtgaat
gtcataggcatgcacaaaatgacacctccaattaaagacctgctgccaaggctcacacct
atcttgaagaacaggcatgaaaaagtgcaggagaattgtattgacctcgttggacgtatt
gcagacaggggagcagaatatgtttctgcaagggagtggatgagaatctgctttgaactt
ttagaattgttaaaagcccataaaaaagctattcgaagagcaactgtaaacacatttggt
tatattgctaaagctatcggaccccatgatgttttggcaacactgctaaataatttgaaa
gtgcaagaaagacaaaaccgagtgtgtactacagtagcaatagctattgtagctgaaacc
tgctcccctttcacagttttgcctgcactcatgaatgaatacagagttccagaactgaat
gtccagaacggtgtattaaaatctctttccttcctctttgaatatattggagaaatggga
aaagattacatttatgctgttactccattgcttgaagatgctttaatggacagggacctt
gttcacagacaaacagctagcgctgtagtacagcatatgtctcttggggtgtatggcttt
ggctgcgaagattctctgaatcacttgttaaactatgtgtggcccaatgtatttgagaca
tcacctcacgtcatccaagcagttatgggagcgctagagggcttgagagttgcgatcgga
ccttgccgaatgttgcagtattgcttacagggtttgtttcaccctgccagaaaagtcaga
gatgtttattggaagatctataactccatctacattggctcacaggatgctctaatagca
cattatccacgaatctacaatgatgaaaagaacacctacattcgttatgaacttgattat
gttctgtaa
DBGET
integrated database retrieval system
