Varanus komodoensis (Komodo dragon): 123030118
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Entry
123030118 CDS
T07701
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
vko
Varanus komodoensis (Komodo dragon)
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vko01009
]
123030118 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vko03019
]
123030118 (HDAC6)
04131 Membrane trafficking [BR:
vko04131
]
123030118 (HDAC6)
03036 Chromosome and associated proteins [BR:
vko03036
]
123030118 (HDAC6)
Enzymes [BR:
vko01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
123030118 (HDAC6)
Protein phosphatases and associated proteins [BR:
vko01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
123030118 (HDAC6)
Messenger RNA biogenesis [BR:
vko03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
123030118 (HDAC6)
Membrane trafficking [BR:
vko04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
123030118 (HDAC6)
Chromosome and associated proteins [BR:
vko03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
123030118 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
123030118
NCBI-ProteinID:
XP_044299674
LinkDB
All DBs
Position
Unknown
AA seq
1146 aa
AA seq
DB search
MMTPPSSESETEANVLERNRNCSALFLQAFSSSFHPRTEVAPVMASYVRDTSVLDPPSGP
PLETQAPLRKGNRKGGLPEAKRKGRAKRLNKDAEELLSSLQQLDLAVECVTPVGTGLVWD
ERMTEFRCTWDERYLSFPECPERLTAIREKLLHCNLLERCTLMAAREISEEEILLAHSPE
YLALMKSTETMSEAELRSLSDTYDSVYLHPNSYRCACLAAGSVLQLVEMVLSGKLRNGLA
LVRPPGHHAQRNKMDGYCMFNNVGIAAQYARQKLGVERVLIVDWDVHHGQGIQYLFEDNP
SILYFSIHRYEGGTFWPHLPESDCHAVGSGRGAGYNINVPWNQAGMQDADHLAAFLHVLL
PVALEFQPQLVLVAAGFDAAVGDPKGEMAATPACFAHLTHLLMLLSGGKVVLSLEGGYHL
QSLAEATCAVLKTLLGDPCPVLESPLIPCSSALRSISQTLAVHSKYWKNLRRISVDAPQE
DGGEEGATFPPADPLTVAEILSRAATELVQPRPPSCTGLVYDEKMTEHYNMWDSQHPELP
QRVSRIFQRHGELRLTERCCRLPARLASEEELRMCHSLAYVEEVKSTAAMKPRDLHRQGD
RYNSIYICANSYECARLATGSAFSAVEAVLSGKQVQNAVAIVRPPGHHAESDTACGFCFF
NSVALAARYAQRLAGQPMRVMILDWDVHHGNGTQHMFEDDPSILYVSLHRYDNGIFFPTS
EDAGYDQVGVGPGKGFTLNVPWNCPRMGDPEYLAAFHQVIMPVGYEFNPELVLVSAGFDA
ARGDPLGGCLVSPECYAHMTHLLLSLAGGKVVLVLEGGYNLESIAESMTMCTRSLLGDPP
PSLGRLKAPHPSALQSLACVAAVHRKYWKSLRLKVPAPLWEKPRTRAAKRTPVPDKIPIE
PSQEPLDSPTAQPVAETVDDAMTVLGSLQLEDNFMEEGETASSSLSPDSSPVGEETRPKT
GSSPEEMKPAAEPQKEGMSVGSSSAEAEFPDNEAKVSPPDLPPGLAEDHLLDEAAGGCSS
FCELLGVDLADAGLLYAVTPLPWCPHLEAVLPVPPAGLNVLEPCAECGSKAENWVCLVCY
KVCCGRYINQHMVAHNSETGHPLVLSFADLSAWCYECQAYIHHPTLFDAKSHAHKLKFGV
DMMIPA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgatgacaccaccctcctctgagtctgaaacagaggcaaatgtcctggaacgaaaccga
aactgctcagctctcttccttcaggcattttcctcatccttccatccaaggactgaagta
gcccctgtaatggcttcctatgtgagagatacctccgtgctggaccccccatctgggcct
cctctggagactcaggcaccactgagaaaaggtaacagaaaaggagggctgccagaagcc
aagcggaagggacgggccaagagactgaacaaagatgcggaggagctgctgtcaagcctg
cagcaattggatcttgctgtggaatgtgtgacgccagtggggacaggtctagtctgggat
gagcggatgacagagtttcgctgcacgtgggatgagaggtatttgagcttcccagaatgc
ccagagcggctgacagccatacgggagaaattgctgcactgtaacctgctggagcgttgc
accctcatggcggctcgtgaaatttctgaggaggagattctcttggctcacagtccggaa
tacctggccctgatgaaatcaacagaaacaatgagcgaggctgagctgagatctctgtca
gacacatacgattctgtctacctgcacccaaattcctaccgctgtgcctgcctggcagct
ggctccgttctgcagcttgtggagatggtgttgtctgggaagctccgtaacggcttggct
ttggtcagaccacccggacaccatgctcagcgcaacaagatggatggctactgcatgttc
aacaatgtcggcattgcagctcaatatgcccggcagaaattgggggtggagcgggttctt
attgttgactgggatgtgcatcatggacaaggtatccaatacctctttgaggacaatccg
agcatcctgtatttctccatccatcgctatgaagggggcaccttctggcctcatcttccg
gaatctgactgtcatgctgtgggtagtggtcggggagcgggctacaacatcaatgtgccc
tggaaccaggcaggtatgcaggacgccgaccacctcgctgcctttttgcatgtcctactg
cctgtggccttggagttccagccccagttggtcctggttgctgctggttttgatgctgca
gttggtgaccccaagggggagatggcagccaccccagcctgcttcgctcacctgactcac
ctgctgatgctgctctctggaggcaaggtggttctgtctctggagggtgggtaccatctc
cagtccttggcagaagcaacctgtgcagtcctcaagactcttcttggagacccctgtcct
gtgctggaatcgcccctcatcccatgcagcagtgccctccgttccatctcccagaccctg
gcagtgcacagcaagtattggaaaaacctccggaggatcagtgtggatgcaccccaggag
gatggaggagaggagggtgccacttttcccccagctgaccccctgacagtagctgagatc
ctgtccagggcagcgactgaactggtgcaaccccggcccccttcctgcacagggctggtc
tacgatgaaaagatgacagagcattacaatatgtgggacagccagcatccggagctgcct
cagagagtctcccggatcttccagcgccacggggagctgcgtctgacagagcgctgctgt
cggctcccagcccgcctggcctctgaagaggagcttcggatgtgccacagcctggcctat
gtggaggaggtgaagtcgactgccgccatgaagccccgtgacctgcaccgccagggcgac
cgctacaattccatctacatttgtgccaactcctacgagtgtgcccggttggccactggt
tctgccttcagtgccgttgaggccgtgctctctggcaagcaggttcaaaacgctgtggct
atcgtccgacctcctgggcaccatgctgaatcagacactgcctgtggcttttgcttcttc
aactcagtggctctggcagcacgatacgcgcagcgcctggctggacaacccatgagggtg
atgatactagactgggatgtccaccatggcaatgggacacaacacatgtttgaagatgat
cccagcatcctgtatgtctccctccatcgctatgacaatgggattttctttcccacctcg
gaggatgcaggctatgaccaagtgggggtggggcccggcaagggcttcaccctcaacgtg
ccttggaactgcccccgcatgggagaccccgagtacctggcggccttccaccaggtgatc
atgcctgttggctatgagttcaatccagagctggttctggtttctgccggatttgatgct
gctcggggggacccactgggtgggtgcctcgtttctccggaatgctacgctcacatgacc
cacctgctcttgagcctggcaggcggcaaggtggtgctggtgttggagggtggctacaac
ctggagtctattgctgagtccatgaccatgtgcacacgcagcctcctgggggatcctccc
cccagtctgggacgcctcaaggccccccaccccagtgccctgcagtctctggcctgtgtt
gccgctgtgcaccgcaagtactggaaaagcctccgactgaaagtgcctgctcctctatgg
gagaagcccaggacccgagctgcgaagagaactcccgttccagacaagatccccatagag
ccctcccaggagccgcttgacagccccacggcgcaacctgtggcagagactgttgatgat
gccatgacggtgttgggctccctccagctagaagacaatttcatggaagaaggagagaca
gcctcaagctctctctctcctgactccagtccggtaggagaggagacccggccaaagact
gggagctcccctgaagaaatgaagccagcagcggagccccagaaagagggaatgtctgtg
gggagctcttctgcagaagcggagtttcctgacaatgaggcaaaagtgagcccacctgat
ctgcctcccgggctggctgaggatcacttgcttgatgaagccgcaggtggctgttcctct
ttctgtgagctgcttggagtggatcttgcagatgccgggctgctttatgctgtgactccc
ttaccgtggtgtccccacctcgaggcggtgctccccgtgcctcctgccggcttgaatgtg
ctggagccctgtgcagaatgtggcagcaaggctgagaattgggtctgcctggtttgctat
aaggtttgctgtggccgctacattaatcagcacatggtagcacacaattctgaaactggg
catccgttggtgctcagctttgcagacctctctgcctggtgctatgaatgccaagcctac
atccaccacccgactctctttgatgccaagagccacgctcacaagttgaagtttggggtg
gacatgatgatccctgcctaa
DBGET
integrated database retrieval system
