Varanus komodoensis (Komodo dragon): 123030549
Help
Entry
123030549 CDS
T07701
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta isoform X1
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
vko
Varanus komodoensis (Komodo dragon)
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
vko01001
]
123030549 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vko04121
]
123030549 (TRIM28)
Enzymes [BR:
vko01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123030549 (TRIM28)
Protein kinases [BR:
vko01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
123030549 (TRIM28)
Ubiquitin system [BR:
vko04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
123030549 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
zf-RING_5
zf-RING_UBOX
PHD
Dimer_Tnp_hAT
zf-RING_2
zf-C3HC4
CEP104-like_TOG
Motif
Other DBs
NCBI-GeneID:
123030549
NCBI-ProteinID:
XP_044300495
LinkDB
All DBs
Position
Unknown
AA seq
1562 aa
AA seq
DB search
MSASATATAPAPAEAGGGGGGAAGEKQRSSSSGSLNVEGIDLLEKCGVCRERLRSERDPR
LLPCLHTVCKECIKVEPASGGNNKDGQVVDCPVCKHQCYLKDIVENYFLRDGGTEALGDA
RDANQCCTSCEDNAPATSFCVECQEPLCETCVEAHQRVKYTKDHTVRSTGSSKSQEREKT
VYCSVHKHEPLVLFCDTCDTLTCRDCQLNAHKDHQYQFLEDAVKNQRKMLASLVKRLGDK
NANLQKSTKEVRTSIRQVADVQKRVQVDVKMSILQIMKELNKRARVLVNDAQKVTEGQQE
KLERQHWAMTKLQRHQEHILRFANWALESDNNTALLLSKKLIYFQLHRALKMIVDPVEPH
GDMKFQWDLNTWIKSAETFGQIVSERSGLPVTPNAQTPQQRANAASGGVAVRQGSVPPSQ
GVQQMSLQTSIMNKGALLQPVLPSNSQRQAIPDCYINDASASSAGQPMDIGDGFGVEGSY
SGEVSGIKRPRGQDGETGLVRKVPRVSLERLDVDLTSDNQPPVFKVFPGSSREDYNLIVI
EQGGQQAAATQQPGLPTAGAAVKEEQMEAAIEHPASVADSKDTKPVLLPQDALLPEGSAA
PRLISPSGSTSSAMEMQSVHSHDGTANGEEAACCRICLKAGAVVMCDDCKKCYHLDCHLP
ALQEIPGQEWKCLLCEDPATAIEADGTDLTPIFIDGEPKTLSDADQKRCERVLLELLCSE
PCRPLHRLSNATEGQNTIDLTLIRAKLQRKLSPPYGSPDEFADDVWKMFRQFNKLTEDKE
DVQSIIVLQRFFEAKLNAAFGDRKFSALREPINVDEPLKETALPPRVSPITDPAAAHCGP
PLSKCLTLSKNFKSPANKTARKLTDTTTEHTKIATPVNISESDLEKQSQTTNDWPDCWTY
DQKNDFCLKNEWLCVCNMKLGCKSCRKVGTLGVETKMGMKLSKEWTNNEITYSGKDRKQQ
LSSLRKKIFEHRESAAHKAALKIVAESEKMTLENVFLTSLSREKTITAKIFRTAYKVAKE
NQSFHHFETEIDLQELNGVEMGRILHSTNACINIINHVSEEMRKTVVKEIVQSNNKISLI
IDESTTISKKTSLIVYVRCCIEGVGMNSPINLFLDLVELEKVVTAEGVFDSLLKCLHSYG
MTEDYLKKYLVSLACDGTAVMLGCKSGVKKLMSEHFPSVIVWHCANHRLELLVGDAVKET
SGINRFKSFIDKLYIIYHASAKNSRELHLYAELLGAELLKIGRILSTRWMSSSFRTVLAV
WNNFESLVYHFEEAMHDPTRDENDKCTYDGLKRKITSTEFLLDLGLMCDALQELSELSLD
LQDHNMDLYKANMKIKILVKVFEERRQNFGPYYKCAVAAVRDLRFRGVLLHKKDSRKDPP
IDPSTFYTKLKESIEKRLLNSKDNELAYWSRVLDQKHWPEDVNTQLTFGEMEIRNLSIRL
QLNEREMIRGFREYILEKTYPEKLSHLIRTLNTIPISSSECERGFSQMNLIATPTRASLK
TKTISALLFIKLVGPPLRLFDPSKYIDLWLLRGRHSAIDTNSRERTQEDLLDKNWTKLWN
LL
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcctctgcgacggcgacggcccctgctccagcggaagcgggcggcgggggaggc
ggcgccgctggggaaaagcagcgctcctcctcctccggttccctcaatgtggaaggcatc
gacctgctggagaaatgcggggtgtgtcgtgagcggctgcgctctgagcgggacccgcgc
ctcctgccttgcctccacaccgtctgcaaggagtgcatcaaagtcgagcccgcctcgggg
ggcaacaacaaggatggtcaagtggttgattgcccagtgtgcaaacaccagtgttactta
aaggacatagtggagaactacttcctgagggatggtggtacagaggcacttggagatgct
agagatgccaaccagtgttgtaccagctgtgaagataatgccccagccaccagcttctgt
gttgaatgccaagagcccttgtgtgagacttgtgtggaggctcatcagagagtgaagtac
actaaggaccacactgtccggtccacaggctcctctaagtcacaggagagagagaagacg
gtttattgctctgtccacaagcatgagccactggtgctgttctgtgacacgtgtgatacc
ttgacctgccgggactgtcagcttaatgcgcacaaggatcatcagtaccaattcttggaa
gatgcagttaagaatcaacgcaagatgctggcctcattggtcaagcgcctgggagataaa
aatgccaatcttcagaagtcaaccaaggaagtgcgtacctcgatccggcaggtggcagat
gtgcagaagcgtgtgcaggtggatgtgaagatgtcaatcctacaaatcatgaaggagctc
aataagagagccagagtactggtcaatgacgcacagaaagttactgaaggacagcaagag
aagctggaaaggcagcactgggcgatgacaaagcttcagcgccaccaggagcatatccta
cgttttgccaactgggccctggagagtgacaataatactgcattgctgctttcaaagaaa
ctgatatacttccagctgcacagggctttgaaaatgattgtagatcctgtggagccccat
ggagacatgaaattccagtgggacttaaatacctggatcaagagtgcagaaacatttggt
cagatagtttcggaacggagtggtttgccagtgacccccaatgcccagacccctcaacaa
cgggccaatgctgcatctggaggagtggcagtcaggcagggttctgttcctccttctcag
ggtgtccaacagatgtctctgcagacaagcataatgaataagggagctctgcttcagcct
gtgctgccttccaacagccagcggcaggccatccctgactgctatatcaatgatgccagt
gcttcttctgctggacagccgatggacattggcgatggctttggtgtagaaggatcatac
tctggtgaagtatctggaatcaagaggccccgtggccaagatggagaaactggtcttgtg
cgaaaagtgccccgtgtcagtctggagcggctagatgtggacctgacatcggataaccag
ccacctgtcttcaaagtatttccaggcagctcccgtgaagattacaatctcattgtgatt
gagcaaggtgggcagcaggctgctgccactcaacaacctggactaccaactgcaggtgct
gcagtaaaggaggagcagatggaggcagctattgaacatccagcatctgttgcagattct
aaagacaccaagccggttctcctgccccaggatgcccttcttccagaaggttccgcagct
cccaggctcatttctccaagtggcagtaccagctctgctatggaaatgcagtctgttcac
agccatgatggcactgccaatggggaagaagctgcttgctgcaggatctgcctgaaagct
ggtgctgtggtcatgtgtgatgactgtaaaaagtgctaccacctcgactgtcacctgcct
gcactccaggaaatccctggccaggaatggaaatgtctactgtgtgaggacccagcgaca
gccattgaagcagatggaacagacttgactccaatcttcattgatggggagccaaagaca
ctctcagatgctgatcagaagagatgtgaacgagttctccttgagttactgtgttctgag
ccatgtaggcctcttcacagactctccaatgctacagaggggcaaaacacaatcgatctg
accttgatcagagccaagctgcagcggaagctttctccaccctatggctctccggatgag
tttgctgatgatgtctggaagatgttcaggcagtttaataagctgacagaggacaaagaa
gatgtccagtccatcattgttctgcagcgcttctttgaggccaagctgaatgctgccttt
ggcgaccggaagttttcagcactccgagaacccatcaatgtggatgagccactgaaagaa
accgcccttcctccccgtgtctccccaatcactgatccggcagctgcacattgtggacca
cctctatccaaatgtttgacactctcaaagaactttaaaagtcctgctaataaaacggcc
aggaaattaaccgacacaacgacagaacacacgaaaatagcgacacctgttaatatttct
gaatctgatcttgagaagcaaagccaaactacaaatgactggccagactgctggacctat
gatcaaaaaaatgatttttgcttgaaaaatgaatggctctgtgtttgcaacatgaaactt
ggctgtaagtcttgtagaaaagttggaactcttggagttgaaacgaaaatgggaatgaaa
ctttccaaagaatggaccaacaatgagataacctattctggcaaagataggaagcaacag
ttgagctcacttcggaaaaaaatttttgagcacagagaatctgctgcacataaagcagca
ttaaaaatagttgctgaaagcgaaaaaatgactcttgagaatgtttttttaacatcatta
tctcgcgaaaaaacaataactgcaaaaatttttcgaactgcatataaagtagcaaaggaa
aatcaatcattccatcattttgaaacggaaattgatctgcaagaactgaatggagttgaa
atgggtcgcattcttcattctacaaatgcgtgtattaacattattaatcatgtaagtgaa
gaaatgaggaaaactgtggttaaagaaattgttcaatctaataataaaatttcattgata
attgatgaatcaaccacaataagcaaaaaaactagcctcatagtatatgttcgatgctgt
atcgaaggtgttggaatgaattcaccaataaatttgtttttggacttggtagaacttgaa
aaagtagtaacggcagaaggagtatttgattccttactcaaatgtcttcactcttacggg
atgacagaagattatttaaaaaaatatttggtttctctggcatgcgacggcactgctgtg
atgttagggtgtaaaagtggagtgaaaaaattgatgtcagaacattttccttctgttata
gtttggcattgtgctaatcacagactagaattattagtaggtgatgctgtcaaagaaact
tcaggaataaatagattcaaatcatttattgataaactttacatcatataccatgcttca
gcaaagaatagtagagagttgcatttatatgcagaattactgggggctgagctgctaaaa
attggaagaattttaagtacgcgttggatgtcatctagtttccgtacagttttggctgtg
tggaataattttgaatcccttgtgtatcattttgaagaagcaatgcatgatcctacaaga
gatgaaaatgataaatgcacttatgatggcttgaaaagaaaaatcacatctacagaattt
ttattggacctaggattgatgtgtgatgctctccaagaactatcagaattaagtttggac
ctacaggaccacaacatggacttgtacaaggcaaatatgaaaataaaaatactggtaaaa
gtttttgaagaaagaagacagaactttgggccctattataaatgtgctgttgctgctgta
cgtgatcttcgctttcgtggagttttacttcacaaaaaagattcaagaaaggatcctccc
attgacccaagtacattttatacaaaattgaaagagtcaatcgaaaaaagattgcttaat
agcaaagacaatgagttggcatattggtctcgtgtacttgatcaaaaacattggcctgaa
gatgttaatactcagctgacatttggagaaatggaaattagaaacttgtcaatcagactg
cagttaaatgaaagagaaatgattcgtggattccgtgaatacattctcgaaaagacatat
ccagaaaaactatcgcatttgatacggactctgaataccattcctatttcttcaagtgaa
tgtgaacgtgggttttcacagatgaatctcattgccaccccaacaagagcctcgttgaag
actaagacaatttcagcacttttgttcatcaaacttgtcggaccacctctgagacttttc
gatccttcaaagtacattgatctgtggttactcagaggacgacattcagccatagatact
aacagcagggaaaggactcaagaagatttgttggacaagaattggacaaaactttggaat
ttactatga
DBGET
integrated database retrieval system
