Varanus komodoensis (Komodo dragon): 123036637
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Entry
123036637 CDS
T07701
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
vko
Varanus komodoensis (Komodo dragon)
Pathway
vko03013
Nucleocytoplasmic transport
vko03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123036637 (UPF1)
03015 mRNA surveillance pathway
123036637 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vko03019
]
123036637 (UPF1)
Enzymes [BR:
vko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123036637 (UPF1)
5.6.2.5 RNA 5'-3' helicase
123036637 (UPF1)
Messenger RNA biogenesis [BR:
vko03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123036637 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
123036637 (UPF1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
123036637
NCBI-ProteinID:
XP_044311950
Ensembl:
ENSVKKG00000011860
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGSGGGAGVPG
APGGGGGGVGPGGPPSVVAPGPLDAQVNGPDGILQNGAVDDNVPKASQLLAELNFEEDEE
DTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTL
HKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRLCRQPCASQSSLKDINWDSS
QWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDE
EPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTL
PKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTH
NFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQG
LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAV
DQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGEL
SSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECM
VPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPA
LSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNR
TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVD
AFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNH
LLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVY
DRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAG
RGNLKSKTGRGGRQKNRFGLPGASQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQM
SQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctgacgttcctcgacacggaggag
gccgagctgctgggcgccgacacgcagggctccgagttcgagttcaccgacttcaccttg
cccagccagacccagacgccgcccggagggggctccgggggcggcgccggcgtgccgggc
gccccgggcggaggcggcggaggagtggggccgggcgggccgccctccgtcgtcgcgccg
gggccgctcgacgcccaggtgaatgggcctgatggcatcctccagaatggggctgtggat
gataatgtgcccaaggccagccagctccttgcagagctcaattttgaggaagacgaggaa
gatacctactacactaaggaccttcctgtgcatgcctgcagctactgcggcattcatgac
cccgcttgtgtggtttactgcaacaccagcaagaagtggttctgcaatgggcgtgggaat
acatctggcagccatatcgtgaaccatcttgtgcgagcaaagtgcaaagaagtgaccctg
cacaaggacggccctctcggcgagacggtcctggagtgctacaactgcggctgccggaac
gtgttcctgctcggcttcatcccagccaaggcggactcggtggtcgtcttgctgtgcagg
ttgtgcaggcagccgtgtgctagtcagagcagcttgaaggatatcaactgggacagctcg
cagtggcagcctctgatccaggaccgctgcttcctctcctggctggtcaaaatcccgtct
gagcaggagcagctgcgagcgcggcagatcacggcgcagcagatcaacaagctggaggaa
ctctggaaggagaacccctctgccaccctcgaggacttggagaagcccggtgtggatgag
gagccgcagcacgtcctcctcagatacgaggacgcgtatcagtaccagaacatctttggg
cctctggtcaaactcgaagccgactatgacaagaagctgaaggagtcccagacccaagac
aacatcaccgtgaggtgggacctgggcttgaacaagaaaagaatcgcctacttcaccttg
ccaaagactgattcagatatgcgcctgatgcagggcgatgagatctgcctgcgctacaag
ggggacttggccccactctggaaaggcatcggccatgttattaaagttcctgataattat
ggtgacgaaatcgcgatcgagctgaggagcagcgtcggtgcccctgtggaagtgacccat
aattttcaagtggacttcgtgtggaagtccacgtccttcgacagaatgcagagtgccctc
aaaacctttgctgtggacgaaacctctgtgtccggctacatctatcacaagcttctgggt
catgaggtggaggatgtggttatcaaatgccagctgccaaagcgctttacggcacaagga
cttcctgacctcaaccattctcaggtgtatgccgtgaagactgtcctgcagcgtcccttg
agcctcatccagggtccccctgggacaggcaagaccgtgacgtcggccaccattgtgtac
catttggccaggcaaggaaatgggcctgtactggtctgcgccccgagcaacatagctgtg
gaccagctgaccgagaagatacaccagacggggctgaaggtggtgcgcctctgtgcgaag
agccgcgaggccatcgactctcctgtctcgttcctggcgctgcacaaccagatccggaat
atggacagtatgccagagctgcagaagctgcagcagctgaaagacgagacgggggagctg
tcgtctgcagatgaaaagcgctaccgggcactgaaacggacagctgagcgggagctgctg
atgaacgctgatgtcatttgctgcacgtgcgtgggagccggcgatccaaggctcgcgaaa
atgcagttccgctccattctgatagacgagagcacgcaggccactgagccagaatgcatg
gtgcccgtggtccttggggcaaagcagctgatcctcgtgggcgaccactgccagctcggc
ccggtggtgatgtgcaagaaggcggccaaggcaggcctgtcccagtccctctttgaacgg
ctcgtggtgctcggaatccggcccatccgcctgcaagtgcagtaccgcatgcacccggcc
ctgagcgcctttccttccaacatcttctacgaaggctctctgcagaacggcgtcactgca
gcggaccgtgtgaagaaggggtttgacttccagtggccccagccagacaagcccatgttt
ttctatgtgacccaggggcaagaagaaatcgccagctccggcacttcttacttgaacaga
acggaggctgcaaacgtagagaagatcaccaccaagctgctgaaggcaggtgccaaaccg
gaccagatcggcatcatcacgccctacgaggggcagcgctcctaccttgtgcagtacatg
cagttcagcggctccctgcacaccaagctctaccaggaagtggaaatcgccagtgtcgac
gctttccaagggcgagagaaagacttcattatcctgtcctgcgtcagagccaacgaacac
cagggaatcggctttctgaacgacccccgccgtctcaacgtggcgctcacgagagcaagg
tatggcgtcatcattgtcgggaacccgaaggccctctccaagcagcccctctggaatcac
ctcctgaactactacaaggagcagaaggtgctggtggaggggccgctgaacaacctccgc
gagagcctcatgcagttcagcaagcctcggaagctcgtcaacacgatcaaccccggggcc
cggttcatgacgactgccatgtacgatgcccgcgaagcgattatccccgggtcggtgtat
gaccggagcagccaaggccggccctccaacatgtacttccagacccacgatcagatcggc
atgatcagcgctgggccgagccacgtggccgccatgaacatccccatcccgttcaacctg
gtgatgccccccatgccgccccccgggtatttcgggcaagccaacgggccggctgccgga
cgcgggaacctgaaaagcaagaccggccgcggcgggcgccagaagaaccgctttgggctc
ccaggggcgagccagtccaatctgcccaacagccaggccagccaagacgtggtctcccag
cctttctctcagggcccactgacgcagggctatatctccatgagccagccctcccagatg
agccagccgggcctgtcccagccagagctgtcgcaggatagttaccttggtgatgagttt
aagtctcagatcgacgtggccctgtcgcaggattcgacttaccagggagagcgcgcatat
caacacggagtgacggggctgtcacagtattag
DBGET
integrated database retrieval system
