Varanus komodoensis (Komodo dragon): 123036658
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Entry
123036658 CDS
T07701
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
vko
Varanus komodoensis (Komodo dragon)
Pathway
vko03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
123036658 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vko03400
]
123036658 (LIG3)
Enzymes [BR:
vko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
123036658 (LIG3)
DNA repair and recombination proteins [BR:
vko03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
123036658 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
123036658
NCBI-ProteinID:
XP_044311976
Ensembl:
ENSVKKG00000005747
LinkDB
All DBs
Position
Unknown
AA seq
994 aa
AA seq
DB search
MYFLPEAQLLQVARALGRRKKLVTQAYPVVRARNNRAFPGCAWLWKGAPLPLAARWCWPW
ASGSASAPLRHLSHPEPPSPTSTMAEQRYCVDYAKRGTAGCKKCKEKILKGLVRIGKVVP
NPFTESGGDMKEWYHVKCIFEKLERARATTKKIEDIMDLEGWEELQDAEKELVNQHISDL
TSKAVSTPKKKVVVQAKLSPGGQITSPKKMPGAPSDPSPKKFSGFTAKPGSSEDAAPSVP
HKPSLSTEKCDPKHKDCLLREFRKLCAMVADKPSYNVKTQIIQDFLQKGSNGDAFRGDLY
LTVKLLLPGVVKSVYNLNDKQIVKLFSRIFSCSQEDMVRDLEQGDVSETVRLFFEQSQSC
PPAAKSLLTIQEVEEFLARLSRLSKEDDQQSLLQELAKRCTGNDLKCIIRLIKHDLKMNA
GAKHVLDALDPNAYEAFKASRNLHDVVERVLRNQQEAQKVPGLKRTLSVQASLMTPVQPM
LAEACKSIEFAMRKCPNGMYAEIKYDGERVQVHKKGDHFSYFSRSLKSVLPHKVAHFKDF
IPRAFPGGHSMILDAEVLLIDTRSSKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVS
LMDRPLCERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMINRVIREGLEGLVLKDIKS
TYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPDSQRWC
TVTKCSGGHDDATLARLQKELDMVKISKDPSKIPGWLKINKNYYPDFIVPDPKAAPVWEI
TGAEFSKAEAHTADGISIRFPRCTRIRDDKDWTTATTLPQLRKLYQLSKERSDLIVAATE
DDASTPSSSGENEGQGGPPTPHKAAKGPPSKSPAKAKKPEAEIFLASKPAERFPLKKAEE
KRGEKRKAAELEEDKRKMLLDIFTGVKLYLPPSVEGFSKIRRYFIAYDGDLVQEFDTASA
THVMGDVEENLMAKQVSPDWIWECIRKRRLVAPP
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgtattttcttcctgaggcacagctccttcaggtagccagggcccttggccgaaggaag
aaactggtcactcaagcttaccctgtcgtccgcgccagaaacaacagggcctttcctggg
tgcgcctggctgtggaaaggcgctcccctgcctttggctgcccggtggtgctggccgtgg
gccagtggctcggcttctgcaccgcttcggcacctctcgcacccagagccaccgagcccc
acctccacgatggcagagcagcgctactgcgtggactacgccaagcgcggcacggccggc
tgcaagaagtgcaaggagaagatcctcaagggcctggtgcgcatcggcaaggtcgtgccc
aacccgttcacggagtccggcggagacatgaaggagtggtaccacgtcaagtgcatattt
gagaaactggaaagggcccgggccacgaccaagaagattgaggacatcatggacctggaa
ggctgggaggaactgcaggatgctgaaaaagagctggtaaaccaacacatctcagacctg
acttcgaaagctgtgagcacgcccaagaaaaaggtggtcgtccaggcaaagctttctcct
gggggacagatcacctctcccaagaagatgccaggggccccttcggatccatcaccaaag
aaattttcagggtttacagcaaagcctggcagttcagaagacgcagcccccagcgtgccc
cacaagccaagcttgtccaccgagaagtgcgacccaaagcacaaggactgtctgctgcgg
gagttcaggaagctgtgcgccatggtggcagataagcccagctacaacgttaaaacccag
attatccaggactttctgcagaagggaagcaatggagacgcctttcgtggggacctctac
ctgaccgtgaagctgctgctgccaggagtcgttaagagtgtctataacttgaatgacaag
cagatcgtcaagctctttagtaggatattcagctgcagccaggaagacatggtccgtgac
ttggagcagggtgatgtttctgagacagtgcggctcttttttgagcaaagccaatcgtgc
cctcccgcggccaagagccttttgacgatccaggaagtcgaagagttcctagcgcggctc
tccagactctccaaagaggacgatcagcaaagtctgctgcaagagctggcaaaaaggtgc
accggcaatgacttgaaatgcatcatcaggctgattaaacacgatctgaaaatgaacgcc
ggtgcaaaacatgtgctagacgctttagaccccaatgcttacgaggccttcaaagcgtcc
cgcaacctccatgacgtggtggagagggtgctgcggaaccagcaggaagcccagaaggtg
ccaggcctgaagagaaccctcagtgttcaggcctcgctgatgacgcccgtgcagcccatg
ctggctgaagcctgcaagtcgattgagttcgccatgaggaagtgtcccaacgggatgtac
gcagagatcaagtacgacggggagcgcgtccaggtgcacaagaagggcgaccacttcagc
tatttcagccgcagcttgaagtccgtccttccccacaaggtagcccacttcaaggacttc
atccccagggctttcccgggaggacacagcatgatcctggatgccgaagtcttgctgatc
gacaccagaagcagcaagccgctgcctttcgggacgcttggggtgcataagaaagccgcc
ttccaggacgccaatgtctgcctcttcgtctttgactgcatctacttcaacgacgtcagc
ctgatggacaggcctctctgtgagcgccgcaagttcctccacgacaacatggtggaaatc
ccgaaccggatcctcttctccgagatgaagcacgtcacgaaagcttcagacctcgccgat
atgatcaaccgggtcatccgtgaagggctggagggtttggtgctgaaagacataaagagc
acctacgagccaggaaaacgccactggctcaaagtgaaaaaagattacctgaacgaggga
gcaatggccgacacggccgacctggtggtgttgggggcattctatgggcaaggcagcaaa
ggcgggatgatgtccatctttctcatgggctgctatgatcccgacagccagaggtggtgc
accgtgaccaaatgctctggggggcacgacgacgccaccctcgcccggctgcagaaggaa
ctggacatggtgaaaatcagcaaggatcccagtaaaattccaggatggcttaagataaac
aagaattactacccagacttcattgttccagacccaaaggctgcgccagtgtgggagatc
acaggtgccgagttctccaaagcagaggcccacaccgccgacgggatctccatccgcttc
ccccgctgcacgcgcatccgagacgacaaagactggacaacggccaccaccctcccacag
ctcaggaagctgtaccagctgtccaaagagcggtccgacttgatcgtggcggccacggag
gacgacgcttccacccccagcagcagtggggagaacgaggggcagggtgggccgcccacc
ccacacaaggctgcaaagggacccccgagcaagtcacctgcaaaggccaagaagcctgaa
gctgagatctttttagccagcaaaccagctgaaagattcccactgaagaaagcagaggag
aagcgaggagagaagaggaaagcagctgagctggaggaagacaagcgaaagatgctgctg
gacatattcactggggtgaagctgtatctgcctccttcagtggagggcttcagcaaaatt
aggcggtacttcatagcctacgacggagacctggtccaagaatttgatactgcctccgca
acacacgtgatgggggatgtggaagagaacctcatggccaagcaggtctcccccgactgg
atctgggagtgcattcggaaacggaggctggtcgcccctccctag
DBGET
integrated database retrieval system
