Candidatus Vallotia laricis: GKR41_00011
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Entry
GKR41_00011 CDS
T07905
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
vla
Candidatus Vallotia laricis
Brite
KEGG Orthology (KO) [BR:
vla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vla03032
]
GKR41_00011 (hupB)
03036 Chromosome and associated proteins [BR:
vla03036
]
GKR41_00011 (hupB)
03400 DNA repair and recombination proteins [BR:
vla03400
]
GKR41_00011 (hupB)
DNA replication proteins [BR:
vla03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
GKR41_00011 (hupB)
Chromosome and associated proteins [BR:
vla03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
GKR41_00011 (hupB)
DNA repair and recombination proteins [BR:
vla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
GKR41_00011 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
UDG82690
LinkDB
All DBs
Position
complement(19456..19734)
Genome browser
AA seq
92 aa
AA seq
DB search
MNKQELIDIVSLKTGTSKLQTSETLDALLEVIKKSVSSGDSVQLIGFGSFGTGNREARTG
RNPKTGEAIKIPAAKTIKFTAGKAFKDAVNNR
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaacaggaactgatcgacatagtctctctgaagactggtaccagcaagctgcaa
actagtgagacactcgacgctctgctcgaagttattaaaaaatctgtttccagtggcgac
agcgttcagttgatcggcttcggcagcttcggcaccggtaatcgcgaagcacgcaccggc
cgaaacccaaagacgggtgaggcgatcaagattcccgctgcaaagaccatcaaattcact
gctggaaaagcattcaaagacgccgtcaataatcgctga
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