Candidatus Vallotia laricis: GKR41_00168
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Entry
GKR41_00168 CDS
T07905
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vla
Candidatus Vallotia laricis
Brite
KEGG Orthology (KO) [BR:
vla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vla03016
]
GKR41_00168 (rnb)
Enzymes [BR:
vla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GKR41_00168 (rnb)
Transfer RNA biogenesis [BR:
vla03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GKR41_00168 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
UDG82823
LinkDB
All DBs
Position
207596..209578
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AA seq
660 aa
AA seq
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MNVFFEESGGLKVGTVLNQHGDTFQVELLSGRRAKVKSKDVLIEFNNPSAADLIQQADAV
SKEIDLDFLWEISPLDKFFFLDLANEYFGGTPDPVQKSALVLCMHSSPIYFRRKGRGQYQ
RAPEEQLKMAIIALERRRQQSLIQQRYENELKAGRLPSAFDGKVLSLLTRADKNSIEYKV
LEAAALSLGKSAAQLMLDVGGIQSARELHEAQFLSEYFPHGTGFPALNVSPLPEDLSEAM
GVQAFSVDDMSTTEIDDAFSVQRLSGNHARIGIHIAAPALGIENGDAVDMIARARLSTVY
MPGRKITMLPDNFVGTFTLKEGGLRPAVSLYLIIDTSTQDIVISETVVERVYILSNLRHN
VLDEIITEQTLQDGTHDYPHKYEIEVLWPFVKSLYEQRQRARIGYGLRREVPHNLDYSFH
IYGEHVNITPRRRSSPLNLIVAELAILANSHWGAFLHAYGVPGIYRAQRAFGPHRTRMQT
TPAPHEGLGVVQYAWSTSPLRRYVDLVNQWQILACVQHGITAKLAAPFKPKDAELYAIVR
NFDETYVAYADHQRCMEHFWCLRWLKQECRDRVTATVVKDDTVRLEEVPLLLHVPGLGVH
ARGVRVLIEVITIDELRVEALCRLIKVLDVQSITCSDETHKNIDVSLDTNSGTAVEAAAR
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgttttttttgaggaatccggtggccttaaggttggaacggtattgaaccaacat
ggtgatacgtttcaggtcgagttactgagtgggcgtcgcgctaaggttaagagtaaggac
gtgcttattgagtttaacaacccgagcgccgctgatctaattcaacaggctgatgcggta
tcaaaggaaatcgatctagatttcttgtgggaaatttctccgttagataagttctttttc
ctcgacctagctaatgagtatttcggtggtacgccagatcctgtgcaaaagagtgcacta
gtactttgcatgcatagctcgccaatctacttccgacgtaaggggcgaggacagtaccag
cgtgcgcctgaagagcagttaaaaatggcaatcatagcgcttgagcggcggagacaacaa
tctcttatccagcagcggtatgagaatgagctaaaggccggcagactaccctctgctttt
gatggaaaagtgcttagtttgctcacgcgtgcagataaaaattcgattgaatacaaagtg
ttagaggcagctgcgctgtcattaggtaagtcagcagcgcagctgatgttggacgtcggt
ggtatccaatcagcacgcgagttgcacgaagcgcagttcttgtctgaatatttcccacat
ggtactggtttccctgcattgaacgttagtccactgccagaagatctaagtgaggcgatg
ggcgtgcaagcattttccgtcgacgatatgtctaccaccgagatagacgacgctttttca
gtgcaacgtctctcaggaaatcacgctagaattgggattcatatcgcagcacctgcgcta
gggatcgagaacggcgatgctgtggatatgatcgcccgtgctcgactgtcaacagtctac
atgccgggcagaaagatcactatgttgccagataatttcgtcggaacatttaccctaaag
gaaggtggattgcggccagcggtatcactatacttgattatcgacacctctacacaggat
atcgtaatatccgagacggtagttgagcgcgtatatattctcagtaatctgcgacataac
gtgttagatgagattattactgagcaaacgctacaggacggtacccacgactacccgcat
aagtatgaaatagaggtgctctggccttttgttaaatcgctttacgagcaacgtcagaga
gcacgtatcggctacggtcttaggcgcgaggtaccgcacaatcttgattacagctttcat
atctacggcgagcacgttaacattacaccacgtcgccgcagttcgccactgaatctaatc
gttgctgaacttgcaattttagctaacagccattggggtgcgtttctacatgcatatggt
gttccgggtatctatcgcgcacagcgcgcgttcggcccgcatcgaacgagaatgcagact
acgccagcaccgcacgaagggctgggggttgtgcagtatgcgtggagtacttcaccgctt
cgtcggtatgttgacttagttaatcagtggcagattttagcgtgtgtacaacatggaata
acagcaaagttagctgctcctttcaagccgaaagacgcagaactatacgcgatagttcga
aattttgacgaaacctatgtagcctatgctgaccatcagcggtgtatggaacatttttgg
tgtctgcgctggctaaagcaagaatgtcgggaccgggtaacagctactgtcgttaaagac
gacactgtacgactcgaggaagtaccgctgcttttacacgttccaggattgggggtgcat
gctcgaggagtgcgtgtgctaatcgaggtaataacgattgatgaattgcgtgttgaggcg
ttatgcagacttatcaaggtgctagatgtgcagagcatcacgtgtagtgacgagacgcat
aagaatatagatgtctcgttagacacgaatagcggaaccgctgtggaggcggcggcgagg
tga
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