Candidatus Vallotia laricis: GKR41_00494
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Entry
GKR41_00494 CDS
T07905
Symbol
ruvB_1
Name
(GenBank) Holliday junction ATP-dependent DNA helicase RuvB
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
vla
Candidatus Vallotia laricis
Pathway
vla03030
DNA replication
vla03430
Mismatch repair
vla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GKR41_00494 (ruvB_1)
03430 Mismatch repair
GKR41_00494 (ruvB_1)
03440 Homologous recombination
GKR41_00494 (ruvB_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vla03032
]
GKR41_00494 (ruvB_1)
03400 DNA repair and recombination proteins [BR:
vla03400
]
GKR41_00494 (ruvB_1)
Enzymes [BR:
vla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GKR41_00494 (ruvB_1)
DNA replication proteins [BR:
vla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GKR41_00494 (ruvB_1)
DNA repair and recombination proteins [BR:
vla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GKR41_00494 (ruvB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
DNA_pol3_gamma3
AAA
DNA_pol3_tau_5
RuvB_N
AAA_16
AAA_22
AAA_14
AAA_2
AAA_18
AAA_5
PIF1
TsaE
AAA_30
DUF3646
RsgA_GTPase
nSTAND3
Mg_chelatase
AAA_assoc_2
AAA_28
Glyco_tranf_2_5
Herpes_Helicase
Rad17
Motif
Other DBs
NCBI-ProteinID:
UDG83117
LinkDB
All DBs
Position
complement(660547..662769)
Genome browser
AA seq
740 aa
AA seq
DB search
MIHQVLARKWRPRDFASLVGQEHVVRALTHILQAQRLHHAYLFTGTRGVGKTTLSRILAK
SLNCETGITATPCGVCTACCKIEEGHFVDYLEMDAASNRGVDEMAALLEHAVYAPVDARF
KIYMIDEVHMLTHHAFNSMLKMLEEPPSHVKFILATTDPQKIPVTVLSRCLQFNLKQMPI
GYIVSHLELILANEGISFEMQALRLLSRAADGSMRDALSLTDQAIGYSAGMITEQAVRSM
LGALDQSYLTQLLDAIIIRDGTTVLSISDEIAARSLSFSTALQDLSGLLHRIAWAQIVPD
SILDEWPEAENIRHFAAQIAPEDVQLYYQIATIGRAELGLAPDGYAGFTMALLRMLVFDT
MHTACGSVSGDTQPTSSTPLVGYPDAEGLISSRICVPETGKASIYFPRLPKFVQDRANTD
EVIQAEERSMQVMCMNAIGQINISADLGGIDTARSRLDEIHEVKIANALSDVTESSSIQL
ELKGDIIAPSLSKAAVSYLDILCVNTLAKSKILSLRSQVDSISSRCTRTPAVALKNSPFE
VSIKPGIQRTSFKSESFVSRNDTLPNNQSVPLSASNRTFDVNTPHFTSMVDNVTHDVRTT
VPSPVPDISLNSLGYDGDWPTLVTLLPLRGIAYQLALHSELIACNCDELVLRVSVPQYTN
VAHVNRLKTAIEQVLGRLIHVTVSVGPAYQTAAAVEFARRAQQQQKAEQEINSDPFVRGL
IREFGATIVLDSIRPLAVHY
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgattcatcaagttcttgcgcgtaagtggagacccagagatttcgcatcgttagttggc
caggaacacgtagtgcgtgcactcacccatattttgcaagcgcaacggttgcatcacgcc
tatttgtttactggaacgcgcggcgtcggcaaaacaacattgtcgaggatcttggcaaag
tcgctcaattgcgaaaccggtattactgctactccgtgcggtgtatgtacggcatgctgc
aaaattgaagaaggtcactttgttgattaccttgaaatggacgcagccagcaaccgaggt
gttgacgagatggcggcactactcgagcacgctgtatacgcaccagtcgatgcgcgcttc
aagatttatatgattgatgaagtacatatgctaactcatcatgcttttaactcaatgctc
aaaatgctcgaggagcctccatcgcatgtgaagtttattcttgctacaaccgatccccag
aaaattcctgtcacagtattatcacgctgtttgcagtttaacctcaaacaaatgccaata
ggctatattgtgtcgcacctagaacttatactagctaacgaaggtattagttttgagatg
caagcattgcgtctgttatcacgcgctgctgacggtagtatgcgcgacgcactgtcgtta
actgatcaagcgattgggtattcagctggcatgattactgaacaagctgtacgcagcatg
cttggtgcactagaccagagttatctaacacagctgctcgatgcgattattatacgcgat
ggtactacagttctctcaatatctgatgagatagcggcacgcagcctctcattctcgact
gcgctacaagatttgtctggattgctgcatcgtattgcgtgggcgcagatagttccagat
tcgatactagacgaatggcctgaggcagagaatattcggcattttgcggcgcagatagca
ccggaagatgtgcagttgtattatcagatcgcaacaattggtcgtgctgagctaggtctg
gccccggatgggtatgctggtttcacaatggcgctattgcgtatgcttgtgttcgatact
atgcatacggcatgcgggtctgtatcaggggatacgcagcctacttctagcacacctcta
gtgggctatccagatgccgaaggcttaatatctagtagaatatgcgtccccgagacaggg
aaagcgtccatatattttccccgcttacctaaatttgtacaagatagggctaatacggac
gaggtaatacaagcagaagaacgcagcatgcaagtaatgtgcatgaatgcaatagggcag
atcaacattagtgctgatttaggtggtatagatacagctcggtcacggctagatgagatt
cacgaagtgaagatagcgaatgcactatcggatgtaacggaatcctcttcgattcaactt
gaattaaagggggatattattgccccatccttatccaaagcagctgtctcatatctagac
atattgtgcgttaatactcttgctaagagcaagatacttagtctgcggagccaagtagat
agtatttccagtaggtgcactcgtacaccggcggtcgcattaaagaactctccatttgag
gtgagcataaaaccaggcatacaaagaacttcttttaaatcggaatcattcgtatcccga
aatgatacgttgccaaacaaccagtccgtaccactctctgcttctaaccgtaccttcgat
gttaatacacctcatttcacctcaatggtagataacgttacacacgacgtgcggactacg
gtaccgtctccagtgccggatatatctcttaattctcttggttatgacggcgattggcca
acgttagtgacattactcccgctccgcggcattgcataccagcttgcacttcatagtgag
cttatagcgtgtaactgtgacgaacttgtattaagagtatcggttccacaatataccaat
gtagcacacgttaataggttgaaaactgcaattgaacaggttctgggtaggctgattcat
gtaaccgtatctgtcggccctgcataccaaacagctgcagctgtagaattcgcgcgccgg
gcacagcaacagcagaaagccgagcaggagattaactcggacccgtttgtgcgggggtta
atccgcgagtttggggcaacaatcgtgctagattcgattcgcccactggccgttcattat
taa
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