Candidatus Vallotia laricis: GKR41_00524
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Entry
GKR41_00524 CDS
T07905
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vla
Candidatus Vallotia laricis
Brite
KEGG Orthology (KO) [BR:
vla00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GKR41_00524 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vla03021
]
GKR41_00524 (rpoD)
Transcription machinery [BR:
vla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GKR41_00524 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
RIH_assoc
Motif
Other DBs
NCBI-ProteinID:
UDG83138
LinkDB
All DBs
Position
complement(698933..700969)
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AA seq
678 aa
AA seq
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MTKKLNKVLPDKETRQVNESASSFTAVKGEKTKARDRRAKEKALLKDAFASRQPGTAEEL
EERRSKLRALIKLGKERGFLTYSEINDHLPDNFAETEAIESIISTFNDMGVAVYEQAPDV
ETLLLNDNAPSLSSDDEVEEEAEVALSSVDSEFGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEDGLKHMVQAISACPTTIVDILAMADRITGNEIRVDELVDGLIDPNAEDENGFST
ADVDEIRSEDSGIDLENEEGDEGAGSAAASATQLDALKRHSLERFALIGEWFEKMRLAYE
NEGYKSKSYLKAQEAIQTELTLIRFTARTVERLCDTLRSQIDEVRQVERCILHIVVDKCG
MSREKFASQFPGNETNLAWAEQIIVEGHPYSAVLARNIPAILEQQQRLINLQTRIVLPLK
DLKEINRQMVSGEFKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGL
EPDPSTLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAAL
HESMRDVVKEVLDLLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSDKLKSFLEGN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaagctgaataaagtactgcctgacaaagaaacgaggcaagtcaatgagtcg
gctagctcattcacggcagtgaagggtgagaagactaaagctcgtgatcgtagggcgaag
gaaaaagcgctgctaaaggatgctttcgcatctcgccagccgggtacagctgaggagctt
gaggagcgccgctcaaagcttcgagcactgatcaagcttggtaaggaaagagggttctta
acctactctgaaattaatgatcatctaccggacaattttgcagaaaccgaggcgattgaa
agcatcattagcacattcaacgacatgggtgtggcagtttatgagcaggcgcctgatgta
gaaacgttgttgcttaacgataacgcgccctcgttatcgtctgacgacgaagtggaggaa
gaggctgaagttgcactatcatcagtggattctgaatttggccgtacaacggacccggta
cgcatgtatatgcgagagatggggactgttgagctattaacacgagaaggtgaaattgag
atcgccaaacgtatcgaagatggcctaaagcatatggttcaagcaatttcagcttgcccc
actacgattgtagatatccttgctatggccgatcggattactggtaatgaaatccgggta
gacgaactagtcgatggattaatcgatccaaatgcggaggatgaaaatggctttagcacg
gctgatgtggatgagattaggtcggaagatagtggaatagatctagaaaatgaagaagga
gatgagggtgctggatcagctgcagctagcgctacgcaactcgatgcccttaagcgtcac
tctttagagcgctttgcattaatcggtgagtggtttgaaaaaatgcgactagcatacgag
aacgaagggtataaatctaagtcgtatctaaaagcacaagaggcaattcagaccgagtta
acattaattcgttttactgcccgaactgttgagcgactgtgtgacacattacgatcgcaa
attgatgaggtacgtcaagtggagcgatgtatcttacatattgttgtcgacaagtgcggg
atgtcacgcgaaaaatttgcttcgcaatttccgggtaatgagactaatctagcctgggct
gaacaaattattgtagaggggcatccttatagcgcagtgctcgctcgaaatatcccagca
attctcgaacagcagcagcgcttgattaatctgcaaacgcgtattgtgttgccactaaaa
gatttaaaagaaataaatcgtcagatggtgtctggagagtttaaggcacgtcaggctaag
cgcgagatgacagaagctaatttacggctagtcatttcaattgcaaaaaagtatacgaat
cgtggcttgcaatttctagatttgattcaagagggtaatatcggcctgatgaaagcagtt
gacaagtttgaatatcgtcgaggttataagttctctacgtatgcaacatggtggattcgt
caagcaattacacgatcgattgcagaccaggctcgcacgatccgcattccagttcatatg
attgagacaatcaataaaatgaaccgtatatctcggcaaattttacaagagacggggctc
gagcctgaccctagcacactcgctgaaaaaatggagatgccagaagacaaaatccgtaag
attatgaagatcgcaaaagagccaatttcgatggaaaccccaatcggggatgatgacgat
tctcatttaggtgattttatcgaggataataatacgctggcaccagcggatgctgcatta
cacgaaagtatgcgggatgttgttaaagaagtgctagatttattaaccccgcgtgaggca
aaagtacttcggatgcgatttggtattgagatgagtacggatcatactctcgaggaggta
ggtaagcagtttgatgtgacgcgggagcggatccgccagatcgaagcaaaagcgttgcgc
aaattgcgtcatccaagccgttcagataaactaaagtcttttttagagggaaactaa
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