Candidatus Vallotia lariciata: GKR41_00532
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Entry
GKR41_00532 CDS
T07905
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vla
Candidatus Vallotia lariciata
Pathway
vla03030
DNA replication
vla03410
Base excision repair
vla03420
Nucleotide excision repair
vla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GKR41_00532 (polA)
03410 Base excision repair
GKR41_00532 (polA)
03420 Nucleotide excision repair
GKR41_00532 (polA)
03440 Homologous recombination
GKR41_00532 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vla03032
]
GKR41_00532 (polA)
03400 DNA repair and recombination proteins [BR:
vla03400
]
GKR41_00532 (polA)
Enzymes [BR:
vla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GKR41_00532 (polA)
DNA replication proteins [BR:
vla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GKR41_00532 (polA)
DNA repair and recombination proteins [BR:
vla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GKR41_00532 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GKR41_00532 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
UDG83146
LinkDB
All DBs
Position
complement(711573..714344)
Genome browser
AA seq
923 aa
AA seq
DB search
MPQQQNPNGNTLLLVDGSSYLYRAYHALPDFRGPDGGPTGALYGFINMMRRLRRDIPAKY
GACVFDAKGKTFRDEWYPAYKANRPLMPEDLAKQIELIHIAVYALGWPKLMIDRVEADDV
LGTLAMRAKQSGMNVVISTGDKDMAQLVNERITLINTMTNEQLDCDGVLAKFGVPPERIV
DYLTLIGDTVDNVPGVEKCGPKTALKWLEQYQSLDGVIAHSNDIKGVLGNNLRRVLAFLP
TARRLVTVHTNCVLFPDVQSISKSLQLRAEAKEKLRDIYVRHGFKTWLRELDIQAEREIL
ININSGEALGLRSPEIEVETDIDRHYEMINVWEQFEKWLSAIKESPLTSFDTETTSLNPL
CARIVGISFATGPGRAAYIPLSHSGPDKPVQLPCDEVLEKLKPWLENPAYKKVGQHLKYD
AQVLANYGITLTGVEHDTLLESYVLESHRSHAIDALAMRHLDVKIIKYEDVVGKGVDLIG
FDKVAVNVATKYSSEDADITLRLHRVLYSRIQVDRGLDYVYRSIELPTSRVLQIIERNGV
LIDKDRLIEQSNELTIRVLRLQDEAHVLACGRFNLNSPKQIAEIFFQQLRLPIIKKTASG
APSTDDEVLQKLSENHQLPRVLLNYRALAKLKSTYTDRLPKMIKPDTGRVHTHYAQAVAV
TGRLVSNDPNLQNIPIRTLEGRRIRGAFIAPPGSSIVSVDYSQIELRILAHISGDESLMA
AFEHGEDIHRTTASEIFGVMRPEITIEQRRIAKVINFGLIYGMSAFRLASNLGITRAAAN
LYVERYFARYSGVKRYMYKIRMEAKSRGFVQTVFGRQLWLPEISSGSDPRRKAAERAAIN
APMQGTAADLIKLSMISVQNWIEQERIKSRLIMQVHDELVLEVPNNELEVIRAKVPELMC
SIGKLNVPLVAELGSGVNWEEAH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgcctcagcagcagaaccctaatggaaatactttgctattggtcgatggttcgagctat
ttatatcgggcctaccatgcgcttccggattttcgtgggccggatggtggtccaaccggt
gcgctgtacggtttcattaatatgatgaggcgattacgacgagatattcctgcgaagtat
ggcgcgtgtgtgtttgatgcaaaaggcaaaacatttcgtgacgagtggtatccggcctat
aaagcgaatcgccctctgatgccagaggatttggctaagcagattgagctaattcatatt
gcagtatatgcgctcggttggccgaagctgatgattgatcgagtggaagctgacgacgtg
cttggcacgctagcaatgcgcgccaaacaatctggcatgaatgtagtgatctcaacgggc
gacaaagatatggcacaattggtcaacgagcgcataacattaattaatactatgactaat
gagcagctcgattgcgatggcgtgcttgcgaaattcggtgtgccacctgagcgtattgtc
gactatctgacattaattggcgatactgttgataacgtgccgggtgtagaaaagtgtggc
ccgaagacagcattaaaatggctggagcaatatcaatcgctagacggagtcattgcgcat
tcgaacgatattaaaggagtactcggcaacaatctgcgccgagtactagcgtttctgcca
acagcgcgccggcttgttactgtgcatactaactgcgttctatttcctgatgtacagtct
atttctaagtcgctgcagctccgggcggaggctaaggaaaaattgcgtgatatttatgtg
agacacggatttaaaacatggttgcgcgagctcgatatccaagctgagagggagattctt
atcaatattaatagtggagaagcgctcggcctgagatcgcctgaaatagaggtggaaact
gatatcgatcgtcattacgaaatgattaacgtatgggagcaattcgaaaaatggttgtca
gcgattaaggaatcacctcttacatcatttgacactgaaactacctctctgaacccgtta
tgtgcccgtatcgttggtatatcattcgcgaccggtcctgggcgtgccgcatatattcca
ctctcacattctggaccagataagccggtacaattgccgtgtgatgaggtgctcgaaaaa
ctcaagccatggctggagaatcctgcatataaaaaagttggacagcatctaaagtatgat
gcacaggtcttagctaattatggcatcacactgacaggtgttgagcacgatacgcttctg
gaatcatatgtgcttgaatcgcatcgttcgcatgctatagacgctcttgcaatgcggcat
ctcgacgtaaaaataatcaaatatgaggatgttgttggcaaaggtgtcgaccttatcggc
tttgataaggtcgcagtaaacgtagccacaaaatattcttctgaggatgcagacattacg
ttgcgattgcaccgggtgctgtattctcgtattcaagttgacagggggctggattatgtc
taccgctctattgagctaccaacatcgcgagtgctgcaaattattgagagaaatggcgta
ctaatcgacaaagatagactcattgagcaaagcaacgagcttaccattcgggtgcttcgg
ttgcaagatgaggcgcacgtactagcctgtggcaggtttaatctgaattcaccgaagcag
atcgccgagattttttttcagcagttgcgattgccaataatcaagaagactgcatcaggt
gcaccatctacagatgatgaggtattgcaaaagctctccgagaaccatcaactaccaagg
gtgttactcaactatcgtgctctagccaagcttaagtcgacttatacagataggctgcct
aaaatgattaaaccggatactggccgcgtacatactcattatgcacaggcggtagcagtg
actgggaggctcgtgtctaatgatccaaatttacaaaacattccgattcggacgctagaa
ggacggcgaattcgcggggcatttattgccccgccagggagcagcatcgtctcagtcgat
tactctcaaatcgagctaagaattctggcacatatctctggcgatgaatcactgatggcg
gcttttgaacatggtgaagatatacatcgaacaaccgcatcggagatctttggcgtaatg
cggccagaaatcacgattgagcagcgtcgtattgcgaaagttatcaattttggcttgatc
tatggcatgagtgcatttagacttgcttcgaatttaggcatcacacgtgctgcagccaat
ctttatgttgaacgttatttcgctcgctattctggtgtcaagcgttacatgtataaaata
cgaatggaggcaaaatctcgtggtttcgtccaaactgtatttggtcggcagctatggctc
ccggaaattagtagcggtagtgaccctcggcgtaaagctgctgagcgagccgcaattaat
gcgccgatgcagggtaccgcagctgatttgatcaagctctctatgatttccgtccaaaat
tggatcgaacaggaacgaattaaatcgcgtttgattatgcaggttcatgacgagttagtt
ctagaggtaccaaataatgaattagaagttattcgtgctaaggtgcccgaactaatgtgt
tcgataggcaagctcaatgtacctctcgtcgctgagctaggctctggcgtcaactgggag
gaggcgcattaa
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