Candidatus Vallotia laricis: GKR41_00557
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Entry
GKR41_00557 CDS
T07905
Symbol
dnaQ
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vla
Candidatus Vallotia laricis
Pathway
vla03030
DNA replication
vla03430
Mismatch repair
vla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GKR41_00557 (dnaQ)
03430 Mismatch repair
GKR41_00557 (dnaQ)
03440 Homologous recombination
GKR41_00557 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vla03032
]
GKR41_00557 (dnaQ)
03400 DNA repair and recombination proteins [BR:
vla03400
]
GKR41_00557 (dnaQ)
Enzymes [BR:
vla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GKR41_00557 (dnaQ)
DNA replication proteins [BR:
vla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GKR41_00557 (dnaQ)
DNA repair and recombination proteins [BR:
vla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GKR41_00557 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
UDG83171
LinkDB
All DBs
Position
751778..752494
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AA seq
238 aa
AA seq
DB search
MRFLVLDTETTGLNAKSGDRIIEIGCVEIVNRQLTGNNLHFYINPERDSNPGALAVHGLT
TEFLSDKPKFVDISNVLLNFVKNTSIIIHNAPFDIGFLDAEFAMLELRPFRNYCGNVIDT
LIRAKAMFPGKRNSLDALCERLGISNTHRAQHGALLDAELLASVYLAMTRGQENLVINVL
ADMPDFGSVARDGVSLDQFDLPVISARNDELIAHASILDELNKTGKEPCVWRESAHSL
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgcgttttcttgttctcgatacagaaactactggtctgaatgctaaaagcggagaccgg
attattgaaattggctgcgtagaaatagtaaaccgacaactgaccggcaataatctgcac
ttttatatcaatccagaacgtgacagtaatcctggtgccttagcggtgcacggattaact
actgaatttctaagcgataagccaaagttcgtagatatttctaatgtgctgcttaatttc
gtgaagaatacaagcattattatccataatgcacctttcgatattggctttctcgacgca
gaatttgcaatgctagagctacgaccatttcgcaattattgcggcaatgtaattgataca
cttatccgggccaaggcgatgtttcctggtaagcgaaactcgttagatgcgctatgcgaa
cgattaggcatcagtaacacacatcgagcacagcatggtgcgctacttgatgcagaattg
ctagcttccgtctatcttgcgatgacacgagggcaagaaaatctagtcattaatgtgcta
gccgacatgccagattttggatcagtagcccgagatggcgtgtcgctcgatcagtttgat
ctacctgtgattagtgctagaaatgacgagcttattgctcacgcgagcatacttgatgaa
cttaacaaaacaggtaaagagccgtgtgtgtggcgggagtctgcacacagcttgtaa
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