Candidatus Vallotia laricis: GKR41_00603
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Entry
GKR41_00603 CDS
T07905
Symbol
ihfB
Name
(GenBank) Integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
vla
Candidatus Vallotia laricis
Brite
KEGG Orthology (KO) [BR:
vla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vla03032
]
GKR41_00603 (ihfB)
03036 Chromosome and associated proteins [BR:
vla03036
]
GKR41_00603 (ihfB)
03400 DNA repair and recombination proteins [BR:
vla03400
]
GKR41_00603 (ihfB)
DNA replication proteins [BR:
vla03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
GKR41_00603 (ihfB)
Chromosome and associated proteins [BR:
vla03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
GKR41_00603 (ihfB)
DNA repair and recombination proteins [BR:
vla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
GKR41_00603 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
TetR_C_30
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
UDG83213
LinkDB
All DBs
Position
complement(812977..813309)
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AA seq
110 aa
AA seq
DB search
MTKSELVAQLALRFPQLVLRDANRAVKIMLGAMSDALSTNHRIEIRGFGRFVLNYRMARV
GRNPKSGKQVQILATWVPHFKPGKELRNRINKKTGQSSIKTGGNNLSGDM
NT seq
333 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatcagagttggtcgctcaattagcgctacgatttccccagcttgtcttaaga
gatgcaaatcgtgcggtcaagataatgcttggagcgatgtccgatgcgctttccaccaat
catcgtatcgagatacgaggctttggtagatttgtactaaattatcgtatggctcgggtc
ggacgaaatccaaagtctggtaagcaggttcagatcctagcgacatgggtacctcatttt
aagccgggcaaagaattacgcaatcggattaacaaaaaaacaggtcagtcgtctataaaa
actggtggcaataatttatcaggcgatatgtaa
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