Candidatus Vallotia laricis: GKR41_00672
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Entry
GKR41_00672 CDS
T07905
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vla
Candidatus Vallotia laricis
Pathway
vla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKR41_00672 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vla03019
]
GKR41_00672 (rhlE_2)
Enzymes [BR:
vla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GKR41_00672 (rhlE_2)
Messenger RNA biogenesis [BR:
vla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GKR41_00672 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UDG83278
LinkDB
All DBs
Position
902442..903680
Genome browser
AA seq
412 aa
AA seq
DB search
MRVARRTGDNSFNMSFYYLGLSEPLVRAVHELGYTTPTPIQQQAIPAILSGGDLLAGAQT
GTGKTASFTLPILEKLSRTRIASSKAIVRALILTPTRELAAQIEESVRKYGKYLKLHSMV
MFGGIGITRQIDLLRCGVDIVVATPGRLLDHIQQCTINLRRLEILVLDEADRMLDMGFIH
DIKRVLKHLPPQRQSLLFSATFSNEIKALAKNLLDLPTLIEVTRCNTTAETVTQTIYLID
RDRKRQLLTLLIKDRNLFRVLVFTRTKHGANRLAEQLIKDDISALAIHGNKSQMARTRAL
SQFKEGTLQVLVATDIAARGIDIDQLPHVVNFDLPNIPEDYVHRIGRTGRAGATGEAISL
VCPDEHPLLTDIERLIKRVLPRNIAAGFEPNLNAKPELIRHPGYPGCSKLYR
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgttgcgcgccggaccggtgataattcatttaatatgtcattttattatcttggt
ttatctgaacctttggtgcgcgctgttcatgaactcggatatacaacgccgacaccaata
cagcagcaagctattccggcaatactcagcggtggcgacctgctagctggcgcacaaact
ggcaccggtaagactgcgagctttacgctgcctatactagaaaaattatcccgaacacgg
atagcatcaagcaaagctatagttcgtgcattaattctgacaccgacacgagaattagct
gcgcaaatcgaagaaagcgtacgcaaatacggaaaataccttaaactgcactcaatggtc
atgtttggaggtatcgggattacccgacaaatcgacttgctgcggtgcggtgtcgacatc
gttgtagctacgccaggacgattgttagaccatattcagcaatgtacgatcaatctccgt
agattggaaatcttagtgcttgacgaagctgatcgaatgctagatatgggcttcattcac
gatatcaagcgtgttcttaaacatctgcctccacagcgccaaagtctgctgttttcggcg
acattctccaacgagataaaagcacttgccaaaaacctactcgatttgcctacgcttatc
gaggtcactcgctgtaatactacagccgaaacagttactcaaacgatctatcttatcgat
cgggaccgtaagcgccagttacttacccttttaatcaaagatcgaaacttgttcagggtg
cttgtgttcacgcgtaccaaacatggggcaaatcgactcgctgaacaattaataaaagat
gacattagtgctctcgctattcatggtaataaaagtcagatggctcgaactcgagcatta
tcgcaatttaaggaaggtacgcttcaggtgttagttgcaactgatattgcggcacgcggc
attgatatcgatcaattaccacatgtagtaaatttcgacttgccgaatattccagaagac
tacgtgcatcgcatcggccgtactgggcgcgcaggtgcgactggtgaggctatatcacta
gtctgccccgatgaacatccattgctaacggacatagaacgcctgattaagcgtgtatta
ccgcgtaatattgcggcgggttttgagccgaatctcaatgctaagccggagttaatccga
catcctggttatccagggtgcagtaagctatataggtga
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