Candidatus Vallotia laricis: GKR41_p00001
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Entry
GKR41_p00001 CDS
T07905
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
vla
Candidatus Vallotia laricis
Pathway
vla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GKR41_p00001 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vla03400
]
GKR41_p00001 (recC)
Enzymes [BR:
vla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GKR41_p00001 (recC)
DNA repair and recombination proteins [BR:
vla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GKR41_p00001 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
UDG82653
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All DBs
Position
unnamed:1..3423
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AA seq
1140 aa
AA seq
DB search
MLKLFYSNRYEVLTTALLSDLEHIDHDLWRPQTIIVPNMAVRRRLELDYADWFGLCANIE
FCYLPQWLWTQIARVEVVHAPQESPFVPERLVWILYKLLTQRSTICSGDNQDLLSRLDLY
LALADPVMIFDLANRISHIFNHYIIYRPYWLSQWLTGKSLFSLNQQLSCGEQWIASETPI
QRADESWQAQLWRDILKELAGAGDVSLDVLEQVSPPAHRFLEIISKLDLGDVARANWPAQ
VSLFALPTIPLLHVQLLSELSRWIDIRIYILNPCREHWFNIIKNQHSNKLHAVEQIDYQR
FRHPLLTEWGRQTQAQLALLHDHIDCAVASVRSKFIEASANSWLSVLQNSILSPKHPVSL
FTRPELDGIEVHVCHSLMRQFEVLHNRLLAAFDADPSLTPADILIVVPDLIAAAPIVSAV
FGMVTLNDPCRIPYRITGLPPYHANALARTLLDWLTLGDRTVNASALIEWLRVDEIAARY
DIDPVALETVQRWLKNAGAFRSFSPNERRDVNTPRTYHTFSDALMRLFLGYAMPDNAPPV
ANWLPIAIPIGSADAMLLGRLAQFIDELDAFVLACTIPKTITQWRNLVNSAIKQFFGFCS
SNSNSLSKLFAILNTLFVQIEASAPDTLLPAAVLHTALLSAMYDPSGGGVPSGAVTISSL
SSLRGVSFRIICIAGIDDGVLPTRVRSDEFDLMVLFEQLGDWKCRDDDRNLFLDLILAAR
DTLLLSYTGRNIRDNSTMLPSALLIELLDYLALLKSGKAASVEDIALAHRSFITEHPLQS
FEPSYFSIAGPLLTYDEDRAQTATAIANHACQNRTTSLFFSDALPPNMCETIRLEKLVRF
WHHPQKVLLRERLGIVFHRAQTKLSDIEPYEFNYAARDALSKRILPLLVESSVYIERAYE
IARALPELPGGATGRAIQEREVMTLSRLAKKIRDRSSSKLESVEFSFRVAPHWPRQLESV
SELLDRVPAWSETVLLPTILSGVLDNTTHNELVLYRYARPTVRDYLDAWLRHLCWCVINP
QASRQTLWVGPDTHFVFTMPQNPHIYLSELCALYRAGLRAPLRFFQKSGWLFMSKHVSAA
NQAWSNDRTGGELADPAIRLALRGTSMTLDNISIVIAKTVFEPLLAHLQLAEELHDFRRA
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaattattttactcaaatcgttatgaggtgcttaccacagcgttgctcagtgac
ctggagcacattgatcacgatctatggcggccgcaaacgatcattgtaccgaatatggcg
gtacgccgccgacttgaattagactacgccgactggtttggcttatgcgcaaatatagaa
ttttgctatcttccgcagtggttatggacacagatcgcacgcgttgaagtagtacacgcg
ccgcaggaatctcctttcgtaccagagcggctcgtatggattctttacaagctacttacc
cagcgcagcacgatatgcagcggagataaccaagatcttttatctcgactagatctatat
ttagctttagcggacccagtaatgatatttgatctagcaaatcgtatatctcatattttt
aaccattatataatctatcgcccgtattggctttcccagtggctgaccggaaagtctctg
ttttcgctaaatcagcagctgagctgcggtgaacaatggatagccagtgaaactccaata
cagcgcgctgacgaatcctggcaagcacaattgtggcgagacattctgaaagagttagcg
ggcgccggagatgttagtctcgatgtactcgaacaggtatcgccacctgcgcaccgcttt
ttagagattatatcgaaattagatttaggtgatgtcgcacgagcgaattggccggcgcag
gtcagcctatttgctttaccgacaataccattattacatgtgcaattgctaagcgaatta
tcgcgctggatcgacatacggatttatatacttaatccatgccgagagcattggtttaat
attattaagaatcaacattctaataagctgcatgcagttgagcaaatcgattaccagaga
tttaggcacccattattgactgagtgggggcggcagacacaggcgcaactcgcgttgctt
catgatcatatcgattgtgccgtagcaagcgtgcgtagtaaattcattgaggcttcagct
aacagctggctctccgtcctacagaattccattctgtcgcctaaacatccagtgtcattg
ttcacccgacctgagcttgacggtattgaggtgcacgtctgccatagtctaatgcggcag
tttgaggtgctccataatcgactgttagctgcatttgacgcggatccaagtttgacgccg
gctgacatactgatcgtagtacccgaccttattgctgctgcgcctatcgtgagtgcagta
ttcggtatggtcacgctgaatgacccatgccggatcccttatcgcatcaccggtttgcct
ccgtaccatgctaacgcacttgcacgaacgctactggattggttgaccttaggtgaccgc
accgttaacgcgtctgcattaattgaatggctacgcgtagatgagattgcggcgcggtat
gatatcgacccagtggcgctagagaccgtgcaaaggtggttaaaaaacgccggcgctttc
cggtcattttcgccgaacgaacggcgggatgtcaatacacctcgtacttatcatacattt
tcggacgctttgatgcggttatttcttggatatgctatgccagacaacgcaccacctgtc
gccaattggcttccaatagcaatacccatcggttctgctgacgctatgttacttggtcgg
ctagctcaatttattgacgagctcgatgcatttgtgcttgcatgcacaatacctaaaacg
attacgcaatggcgtaacctggtaaatagcgctattaagcaattctttggtttttgtagc
tcaaattctaactcattaagtaaactatttgccatacttaatactcttttcgtgcaaata
gaagcgagtgcaccggacacactattacctgctgccgttttgcatacggcactattgtcc
gctatgtacgatccctccggcggcggagtcccatctggtgccgtaactatatcgtcgtta
tctagcttacgcggcgtatcgtttcgtatcatctgtatagcgggcatcgatgacggagtg
ttacctacacgcgtgcgttcggacgagttcgatctgatggttttatttgagcaacttggt
gactggaaatgtcgagatgatgatcgcaacttgtttctggatctcatattggcagcacgc
gatactctgctgcttagctatactggccgcaatatccgcgacaatagcacgatgctccca
tcagcgttattaattgagttgcttgattacctcgcgttattgaagtctggcaaagcagca
agtgtcgaagacattgcattggcacatcgcagctttattactgaacatccactacagtca
tttgagccatcatatttttcgatcgcgggtcctttattaacctacgacgaagatcgtgca
caaacagctacggcgattgccaatcatgcgtgccaaaatcgcactacatcactgtttttt
agcgacgctttacctcctaatatgtgcgagacgataaggttagaaaaattagtgcgattt
tggcaccatccgcaaaaagtactgctacgtgaaagactgggcattgtcttccatcgcgca
cagacaaaactgtccgatatcgagccgtacgagttcaactatgcagcgcgtgatgcgctt
tccaagcgcattttgccattgctggtcgagtcatcagtatacatagagcgggcatatgag
attgcgcgcgcactcccagaattgcctggaggcgcaaccggacgcgcgatacaggagcgc
gaggtaatgacattaagtaggctagctaaaaaaatccgagatcgctccagtagcaagctg
gaatctgttgaattctcatttcgcgttgccccacactggcctagacaacttgaatctgta
tcggagctgctggatcgggtgccggcatggagtgaaacggtgttattgccgacaatattg
tctggcgtgctagataatacaacacataacgaattggtactctatcgctatgctaggccg
acggtccgtgattatcttgatgcgtggttgcgccatctatgctggtgtgtcataaatcct
caagcatctcgacagacactatgggttggacccgatacacatttcgtatttacgatgccg
cagaatccgcacatatacttaagcgagttatgtgcgctatatcgtgctgggttgcgcgca
ccattgcgtttttttcaaaaaagtggatggttattcatgtctaagcatgtatctgctgct
aatcaagcatggtcgaatgaccgtacgggtggtgagcttgctgatccagcaatccggctc
gcgttgcgtggcacttcaatgacactggataatatttctatagttattgctaaaacagta
ttcgagccactgcttgcacacctacagctggcagaggaacttcatgactttcgacgcgct
tga
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