Candidatus Vallotia laricis: GKR41_p00003
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Entry
GKR41_p00003 CDS
T07905
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vla
Candidatus Vallotia laricis
Pathway
vla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GKR41_p00003 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vla03400
]
GKR41_p00003 (recD)
Enzymes [BR:
vla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GKR41_p00003 (recD)
DNA repair and recombination proteins [BR:
vla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GKR41_p00003 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
Helicase_RecD
SH3_13
UvrD-helicase
SLFN-g3_helicase
DEAD
RecD_N
AAA_22
MukB
Flavi_DEAD
UvrD_C
GvpD_P-loop
AAA_25
CbiA
AAA_29
Bcl-2
Motif
Other DBs
NCBI-ProteinID:
UDG82655
LinkDB
All DBs
Position
unnamed:7177..9396
Genome browser
AA seq
739 aa
AA seq
DB search
MSRTILSQAFSRRAAALAKHCGSSFSDARIAEAAAAMLSQALSIGHVCIELIVLAQKFGQ
QLDMIRASLIASGIAMCINDHDLIPHLPLVIDNDDRLYLGRYYEFERRLAKTLSIRARAE
FDNTSSHDSHRWNNVLSRYFGKTSGSNINWQRVAAAIACSGQLTIINGGPGTGKTTTVLG
ILACLLNDQPNLRIALAAPTGKAAQHMLESLAPRKNRLDKNMAAQLPTIAYTLHRLLGST
PDGCFRYHLRNPLPYDVIVVDEASMIDIELASRLVDAIAPRARLILIGDKDQLSAVDAGS
VFAELNAYPCYTGERSQRIARMVGCTANKLRNEFSEYVYYSSLKYAISSSNTVGYCGMSV
DRRNQWNRPTTLPNSSIAETLPIKKPINNPQYCLPTQAISLIQSSASAQAIIPEQFTESS
KITTSSLIEEPKQSNLFFDVNLTDRINIYKPEPDASKSVVCLPSPVLANCVVWLQTNYRF
NPDSSIGKLSSAIRNGLSEDVLGMLDKTNNCAGSYFIEDSGPILSHRSREYIIQSFTCYI
DLLIGMLKRQKIEAEALFNSLNAFRVLCAVRAGPYGVDALNNWITIKLLQLARSSFSSDT
QWFTGRPIIVTRNNYALGLFNGDIGLALPSNDGRLRVVFERGAGNFQSVPPEMLSSHDTA
FALTVHKSQGSEFKRVALVLPPTYSQTLSRELIYTAVTRARTQIAIIGTRSIIERAISTP
TRRNTGLSARLRYAAVHNN
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgtctaggactatattatcccaggcgttttctcgtcgagcagcggcgcttgctaagcat
tgcggcagcagcttcagcgatgcacgtatcgctgaagctgctgccgcaatgcttagtcag
gcgctttctattggacatgtctgcatcgaattaatagtgctggcgcaaaaatttgggcaa
cagcttgatatgatccgtgcatcattgatcgcaagcggtattgctatgtgtattaatgat
catgatctaataccccatttacctctagtgattgacaacgatgatcggttatatcttggg
cgttactacgaattcgagcggagacttgctaaaacactgagtatacgagcgcgggcggaa
tttgataatacgtcgtctcatgactcgcatcggtggaataacgtgctatctcgctatttc
ggaaaaacgagtggtagtaatatcaactggcaacgcgttgcagcagctatcgcctgttct
gggcagctgacgattattaatggggggccgggtacaggcaagacaactacagtccttgga
attctagcgtgtttgcttaatgatcaaccgaatttacgcattgcgctggctgcgcccact
ggtaaggctgcacagcatatgctggaatcattggcgccccgtaaaaacagactagataaa
aatatggctgctcaactaccgactatagcatataccctacatcggttattaggtagtaca
ccagatgggtgtttccgctaccatctacgcaaccctttgccgtatgatgttattgttgtc
gatgaggcttcgatgattgacatcgaactagcaagccgcttagtggatgccattgcgcca
cgtgctcgattaattttaataggtgataaagaccaattatctgcagttgatgcgggatcg
gtgtttgctgaactgaatgcttatccatgctacacgggggagcgctctcagcgtattgca
cggatggtaggctgtacagctaataaattacgaaacgaattctccgaatatgtttattat
agctcactcaaatatgctatttcgtcatctaatacagtaggttactgtggtatgtcagtc
gatagacgaaatcaatggaatcgaccaactactttaccaaactctagtatcgcagaaacg
ctaccaatcaagaaacccattaataatccgcaatattgcctgcctacgcaagcaattagc
ttaatacagtcttctgcgtcggcgcaagctattatcccagagcaatttacggaatcctcg
aaaattactacatcgagtctgattgaagagcctaaacagagcaatctatttttcgacgtc
aacttgacagatagaataaacatctataaaccagaaccagatgcatcaaaatcagtagtc
tgcttaccgtcgcccgtgcttgctaattgcgtcgtctggttgcaaactaattatcggttt
aatccggactcctcaattggaaaactatccagtgcaattcgaaatggtttatctgaagat
gtactgggtatgctcgataagacaaataattgcgcaggctcatattttattgaagatagt
gggccaatactcagccataggtcacgcgaatatattatacaaagttttacatgctatata
gacttgctcataggaatgctaaaaagacaaaaaatagaggcagaagctctatttaattcg
cttaacgcatttcgtgttttatgcgctgtccgcgctggcccctatggtgttgatgcttta
aataattggattactataaaactacttcagctcgctcgctcatctttttcatcggatact
cagtggtttacgggccgtccgattatcgttacacgcaataattacgcacttggtttgttt
aatggagatattggccttgctcttccatctaacgacggtaggctacgagtagtcttcgaa
cgaggagctggaaatttccaaagcgtacccccggaaatgctatcatcacacgatacagca
tttgcactaacagttcacaagtcgcaaggttcggaatttaaacgagttgcattagtgttg
ccacctacatatagccaaactttatcgcgggaattaatttatacagctgtgacccgggcg
cgaactcaaatagcgattattggtacgcgttctattatagaacgggctattagtacacca
acacgtcgtaatactggattatcagctcgcttgcgatacgcggctgtacataacaattaa
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