Vagococcus luciliae: G314FT_03520
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Entry
G314FT_03520 CDS
T09015
Symbol
cshA
Name
(GenBank) ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vlc
Vagococcus luciliae
Pathway
vlc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vlc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G314FT_03520 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vlc03019
]
G314FT_03520 (cshA)
03009 Ribosome biogenesis [BR:
vlc03009
]
G314FT_03520 (cshA)
Enzymes [BR:
vlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G314FT_03520 (cshA)
Messenger RNA biogenesis [BR:
vlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G314FT_03520 (cshA)
Ribosome biogenesis [BR:
vlc03009
]
Prokaryotic type
rRNA helicases
G314FT_03520 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
PYRIN
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UUV98260
LinkDB
All DBs
Position
complement(328743..330290)
Genome browser
AA seq
515 aa
AA seq
DB search
MKFSELQLEKSLLQAIENIGFEEATPVQSATIPLALEGRDVIGQAQTGTGKTAAFGLPML
NKIDTNKPVLQALVIAPTRELAIQTQEELYRLGKEKKVKVQSVYGGADIGRQIRALKNKP
QIVVGTPGRLLDHINRRTLKLDTVETLVLDEADEMLNMGFLDDIEAIISKVPAERQTLLF
SATMPDSIKRIGVKFMQDPEHIRIKAKEMTANLIDQYYVRCKEFEKFDVMTRLFDVQSPE
LTIVFGRTKRRVDELARGLEMRGYKAEGIHGDLPQHKRMSILKAFKNGELDILVATDVAA
RGLDISGVSHVYNYDIPQDPESYVHRIGRTGRAGKEGMSVTFVTPNEMGYLHVIEDLTKK
RMTPLRPPSKKEAVEGQIGAAITEIKDLLAANGLEKYQLAASDLLEEYTAEDLVALLIKQ
ISKDDAAEVPVKITPERPLPNRRGNNKGGRGGKGGNYNRRNNNKGGGRGGKEQYNKKKRY
NNSDAPKKNNNNKSNNKPSQKKDGGRGFVIRNNDK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttagtgaattacagttagaaaaaagtttattacaagctatcgaaaatattggg
tttgaggaagcaacacctgtacagagtgccacaataccattagcgttagaaggaagagat
gttattggtcaagctcaaacaggtactggtaaaacagctgcatttgggttaccaatgtta
aataaaattgatactaataaaccagtattacaagcattagttattgcgccaacgcgtgaa
ttagctatccaaacacaagaagaattatatcgtttaggtaaagaaaaaaaagtcaaagtt
caatctgtttatggtggagctgatattggtcgacaaattcgtgcgttaaaaaacaaacca
caaattgttgtgggaactcctggccgtttattagaccatattaaccgccgtacgttgaaa
ttagatacagtggaaacacttgtattagatgaagcagatgaaatgttaaatatgggattc
ttagatgatatcgaagccatcatctcaaaagttccagcagaacgccaaacattattattc
tcagcaacaatgccagattcaatcaaacgtattggggttaaattcatgcaagaccctgaa
catatccgtatcaaagcaaaagaaatgacagctaacctaattgatcaatattacgttcgt
tgtaaagaatttgaaaaatttgatgttatgacacgtttgtttgatgtacaatcacctgag
ttgacaattgtttttggtcgtacaaaacgtcgcgtcgatgaattggctcgtggacttgaa
atgcgtggttacaaagcagaaggaattcatggtgatttaccacaacacaaacgcatgagt
attttaaaagccttcaaaaatggcgagttagatattttagtggcaacagatgtggcagca
cgtggattagatatttctggtgtgagtcatgtgtataactatgatattccacaagatcct
gaaagctatgttcaccgtatcggtcgtactggtcgtgctggtaaagaaggaatgtcagta
acgtttgttacaccaaatgaaatgggatacttgcatgtcattgaagatttaacgaaaaaa
cgtatgacacctcttcgtccaccttctaaaaaagaagcagtagaaggacaaattggagca
gcaattactgaaattaaagatttattagctgcaaatggcttagaaaaatatcaattagca
gcaagtgatttactagaagaatacactgcagaagacttagtggcattattaattaaacaa
atttctaaagatgatgcagccgaagttcctgtaaaaattaccccagaacgtccattacca
aaccgtcgtggaaataacaaaggcggccgtggtggtaaaggtggtaactacaatcgtcgt
aataacaacaaaggtggcggccgtggtggcaaagaacaatataacaagaaaaaacgttat
aacaattctgatgcacctaaaaagaataataacaataaatcaaacaacaaaccttcacag
aaaaaagatggtggacgtggatttgttattcgtaacaacgataaataa
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