Vagococcus luciliae: G314FT_04150
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Entry
G314FT_04150 CDS
T09015
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vlc
Vagococcus luciliae
Pathway
vlc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G314FT_04150 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vlc03400
]
G314FT_04150 (mfd)
Enzymes [BR:
vlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G314FT_04150 (mfd)
DNA repair and recombination proteins [BR:
vlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G314FT_04150 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
AAA_16
MFD_D3
RecG_dom3_C
IstB_IS21
AAA_7
NPHP3_N
TniB
Motif
Other DBs
NCBI-ProteinID:
UUV98299
LinkDB
All DBs
Position
complement(390515..394069)
Genome browser
AA seq
1184 aa
AA seq
DB search
MYLNQSIMTIIEQDKQVKEWLDNSETQKSQLITGLAGSAKTLVMSTLLKKNKKIMIVTPN
LYYGTKLMDDLQHIVDESYLHFFPVDEVAAVEMSFSSPEALAERINSMVFLNNDEPGILV
TPLAGLRRFLPAPNNWKDNVWSVEVGGTIDLTSLPETLVSLGYVREQMIGKPGEFSIRGS
IIDIYPLTSEYPVRIDLFDDEIDSLRLFDVETQRSLSDVNQLLIPPAMDQVVTKEELANA
ASVLDDALSKKIDGIKDIDRKNQLTAYKNYTVGEWGSGHPTDDISQYIDMIYEEKYHLSD
YLSHDDLVLVDDYSRMIDTEKEILREESEWLTIKLEDNPVFEDRTLGGDFRQIMKKMPQN
RTFFSLFQKGMGNLRFSSIYPFEYRAMQQFFGQLPLLKAEMDRWAKQKQTVVVLVENDER
SKTVERLFIDADISVVVNNKKELLKGQAQIQVGLLESGFELPQDNLIVLVEKEILHTRTK
RQARKQTISNAERLKSYNELSPGDYVVHANHGIGKYIGMETLLSGGTHQDYMTILYQNND
KLFIPVTQLDLIQKYVASESKTPRINKLGGSEWTKTKKKVSAKVEDIADDLIQLYAAREA
EVGYAFSPDDDYQHEFDNAFPYAETDDQLRSIQEIKKDMEKKRPMDRLLVGDVGYGKTEV
ALRAAFKAVRDGKQVAFLVPTTILAQQHYETMLDRFKNFPVSIGLMSRFRTKKQQEETID
QLKKGQVDIIVGTHRILSKDLEFMDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEKNPGAIREACEREIARGGQIFYLYN
RVDTIEQKVDELKMLLPDARISYAHGQMTEVQLENALMEFINGEYDILVTTTIIETGVDI
PNVNTLFVENADHMGLSQLYQLRGRVGRSNRVAYAYFMYEPQKVLNEVSEKRLQAIKDFT
ELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYTHMLNEAVNRKRGVDSKETKTM
TEIDLGIDAYIPNDYIEDERQKIEMYKRIRQLENQEMYDELEADLLDRFGEYPDEVANLL
TIGLIKMNADFALIDKIQKKKQSIYIELSKEGTSAYTIEQLFKALSKTTLKAEISTDEHL
AVTFKLGKDTTIATWLHEVSTFIEALRQERYAKKDVQDDADGKN
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgtacctcaatcaaagtataatgaccataatagaacaagataaacaagtaaaagagtgg
cttgataatagtgaaacacaaaaatcacagttgattacaggtttagctggttcagctaaa
acactagtgatgtcgacattactgaaaaaaaataaaaaaataatgattgtaacccctaat
ttatattatgggacaaaattgatggatgacttgcaacacattgttgacgagtcttatttg
catttctttcctgttgatgaagtggcagcagttgaaatgtcgttctcttctccagaagct
ttggctgagagaattaatagtatggtgtttttaaataatgatgaaccgggtattttagtg
acacccttagctggattacgtcgatttttaccagctcctaataattggaaagataatgta
tggtcagttgaagtaggaggcacgatagatttaacttctttacctgaaaccctggtctct
ttagggtatgttagagaacaaatgataggtaaaccaggtgaatttagtattagaggaagt
atcattgatatttatcctttaactagtgaatatcctgtacgtatcgatttgtttgatgat
gagattgattcactgcgtttgtttgatgtagaaacccaacgttccctatcagatgtgaat
cagttattaattccaccggctatggatcaagtggtaacaaaagaggaattagccaacgcc
gctagtgttttagacgatgcgttaagtaaaaaaattgatggtataaaagatattgataga
aaaaatcagttaactgcttataaaaattatacagtgggtgagtggggtagtggtcacccg
actgatgatattagtcaatatattgatatgatttatgaggaaaaatatcatttaagtgac
tatttatctcatgatgatttggtattagttgatgattacagtcgcatgattgatactgaa
aaagagattttacgagaagaatcagaatggttaaccatcaagttagaagacaatccagtg
tttgaagatcggacattgggtggtgatttcagacagattatgaaaaaaatgcctcaaaat
cggacatttttctctctatttcaaaaaggaatggggaatttacgtttttcttcaatttat
ccgtttgaatatcgagcgatgcaacagttctttggacaattgccactcttaaaagcagag
atggaccgttgggcaaaacaaaaacaaacggtcgtggtactagtcgaaaatgacgaacgt
agtaaaacggtagaacgcttgtttattgatgcagacatttctgttgtcgtcaataacaaa
aaagagttattaaaagggcaagcacaaatccaagttggcttattagaatcagggtttgag
ttgccacaagataacttaatcgtgttagtagaaaaagaaattctacataccagaactaaa
cgccaagcacgtaaacaaaccatatccaatgcggaacgattaaagagttataatgaatta
agtcctggtgattatgtggttcatgctaatcatggtattgggaaatatatcggaatggaa
acattgcttagtggtggcacgcatcaagattacatgaccattttgtatcaaaataatgat
aaattatttattccggtgacccagttagatttgattcaaaaatatgtcgcatctgagtct
aagacgccacgtattaataaattaggtggtagtgagtggacgaagacaaagaaaaaagta
tcggctaaagttgaagatatcgcggatgatttaattcaattatatgcagcaagagaagct
gaagtaggatatgctttttcaccagatgacgattaccagcatgagttcgacaatgccttc
ccgtacgcagaaacggacgaccaattgcgaagtatccaagaaattaagaaagacatggag
aaaaaacgaccaatggaccgtttgcttgtaggggacgtgggttatgggaaaaccgaagta
gcgttgcgtgcggcgtttaaggcggtaagagatggcaagcaagttgcattcttagtccca
acgactatcttagctcaacagcattatgaaacaatgttagaccgatttaaaaatttccca
gtcagtattgggttaatgagtcgatttagaacgaaaaaacaacaagaagaaacgattgat
caattaaaaaaaggtcaagtggatattattgtcggcacacatcgtattttgtcaaaagat
ttagaatttatggatttagggttattgattattgatgaagaacaacgttttggagtgaag
cataaagagcgattaaaacaattacgtgcgcaagttgatgtgttgacactgacagctaca
ccgattccaagaacattgcacatgtccatgttgggtgtgcgagatttatctgtgattgaa
acccctccagccaatcgttatccagtacaaacatatgtgatggaaaaaaatccaggagcg
atacgtgaggcgtgtgaacgagaaattgctcgtggtgggcaaattttttacttgtacaat
cgtgtggatacaattgaacaaaaagtcgatgagttgaaaatgctattaccagatgcacgt
atttcttatgctcatgggcaaatgactgaagtgcaattagaaaatgcgttgatggaattt
atcaatggagagtacgatattttagtgacgactaccattattgaaacaggcgtggatatt
cctaatgtgaatacattgtttgtggaaaatgccgatcacatgggcttatctcagctttat
cagttaagaggtcgcgttggtcgaagtaaccgtgtggcgtatgcttattttatgtatgaa
ccacaaaaagtattaaatgaagtgagcgagaaacgacttcaagcgattaaagattttact
gaactaggttctggatttaaaattgcgatgcgagatctatcaattcgaggtgctggaaac
ttactaggggctcaacaacacggctttattgactcagtcggatttgacatgtatacccat
atgttaaatgaagcagttaatcgtaagcgtggtgtcgatagtaaagagacaaaaacgatg
actgaaattgacttgggcattgatgcgtatattccaaatgattacatagaagatgaacgt
caaaaaattgaaatgtataagcgaattagacaacttgaaaatcaagagatgtatgatgaa
ttagaagctgatctattagaccgatttggtgaataccctgatgaagtcgcaaatttatta
actattgggttgataaaaatgaatgctgattttgccttaattgataaaattcaaaagaaa
aagcaatcgatttatattgaattaagcaaagaagggacatctgcttacacaatcgaacaa
ttgtttaaagctttatcaaaaacaactttaaaagcagaaattagtacagatgagcatttg
gctgtgacattcaaactaggtaaagacacaaccattgcaacatggttacatgaagtgtct
acatttattgaagcattaaggcaagagcgatatgctaaaaaagatgtacaggatgatgcg
gatggaaaaaattaa
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