Vagococcus luciliae: G314FT_08210
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Entry
G314FT_08210 CDS
T09015
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vlc
Vagococcus luciliae
Pathway
vlc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vlc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G314FT_08210 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vlc03021
]
G314FT_08210 (rpoC)
03400 DNA repair and recombination proteins [BR:
vlc03400
]
G314FT_08210 (rpoC)
Enzymes [BR:
vlc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G314FT_08210 (rpoC)
Transcription machinery [BR:
vlc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G314FT_08210 (rpoC)
DNA repair and recombination proteins [BR:
vlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G314FT_08210 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UUV98667
UniProt:
A0ABY5NYK6
LinkDB
All DBs
Position
789241..792891
Genome browser
AA seq
1216 aa
AA seq
DB search
MIDVNKFESMQIGLASSEKIRSWSYGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVTDPGDTNLELKQLLTEREYREKRQQYGQAFKAGMGAEAIKRLLE
QVDLEKEVAELKEELKKASGQKRTRAIRRLDILEAFRTSGNDPDWMVMDVVPIIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKE
MAIELFKPFVMHELVKREIASNIKNAKRQIERQEDAVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCEAYNADFDGDQMAVHVPLNEEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEEPGQIGEGMIFRDLDEVVLAWRNGCVHLHTRIGLQ
TSSMPEKPFTEWQRERILTTTVGKAIFNEIMPPEFPYLNEPTDYNLTVQTPDKYFVEAGA
DIPAFIKEQPEVGPFKKKNLGNIIAEVFKRFKITETSKMLDRMKDLGYKHSTYAGMTVGI
ADIVVLHEKQAMIEEAHNQVEKVTKQFRRGLITDDERYERVIGIWNATKDAIQAKLMESL
DARNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIVSNFREGLTVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRETDCGTDRGLDISVMKEGNEIIETLE
ERMLGRYTRKSVIHPETKEVIVGANEIITEDIAKQIVDAGIEQITIRSVFTCNTKHGVCK
HCYGRNLATGSEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVISEVAGEVIEITEDQADRTKEVVVKGQTDTRSYSVPYTSRMKVAEGDIID
RGTPLTEGSIDPKQLLTVKDVLAVENYLLKEVQKVYRMQGVEIGDKHVEVMVRQMLRKVR
VMDPGDSDILPGTLVDISEFKDRNYNTLVSGGTPATGRPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMAKYRNMEPKEVGVASENVYSIS
DIEAQMAAAEALKNQE
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtaaataaatttgaaagtatgcaaattggactagcttcttctgagaaaatt
agaagctggtcatatggtgaagtgaaaaaaccagagacaataaactaccgtactttaaaa
ccagaacgtgatggtcttttctgcgagcgtattttcggtcctactaaggactgggaatgt
gcctgtggaaaatataaacgtatccgttataaggggattgtttgtgaccgctgtggggtt
gaggtaacacgttctaaagttcgtcgtgaacgtatgggtcatatcgaacttgcagctcca
gtaacacatatttggtattttaaaggaattcctagtcgtatgggtcttgtactagatatg
agccctagagcattagaggaaatcatttattttgcttcttatgtagtaactgatccaggt
gacactaacttagaattaaaacaacttctaactgaacgtgaataccgtgaaaaacgtcag
caatatggccaagcatttaaagctggtatgggtgctgaagcaatcaaacgtttattagaa
caagttgatttagaaaaagaagtcgctgaattaaaagaagaattgaaaaaagcgtctgga
caaaaaagaacacgtgctattcgtcgtttagatatcttagaagcattccgtacatcagga
aatgatcctgactggatggtaatggacgttgtaccaattatcccgccagatttacgtccg
atggttcaattagaaggtggacgttttgcgacaagtgatttgaacgacttataccgtcgt
gtcattaaccgtaataatcgtttgaaacgtttattagacttaaatgcaccaggaattatc
gttcaaaacgaaaaacgtatgctacaagaagcggtagatgcgttaatcgataatggtcgt
cgtggtcgtccagtaactggaccaggtaatcgtccacttaaatcgttatctcatatgttg
aaaggtaaacaaggccgttttcgtcaaaacttattaggtaaacgtgttgactactcaggt
cgttcagttatcgttgttggacctttcttaaaaatgtaccaatgtggattgccaaaagaa
atggcaattgaattattcaaaccatttgtgatgcatgaattagttaagcgtgaaattgca
agcaacattaaaaatgcaaaacgccaaatcgaacgtcaagaagacgctgtttgggatgta
ttagaagatgtgattaaagaacatcctgtattacttaaccgagcacctactctacataga
cttggtatccaagcgtttgaaccagttttagttgaaggacgcgcaatccgtcttcaccca
ttagtatgtgaggcgtataatgccgatttcgatggggaccaaatggcggttcacgttcca
ttaaacgaagaagctcaagcagaagcgcgtatgttaatgcttgctgctcaaaacatcctt
aatccaaaagatggtaaaccagttgttacaccatctcaagatatggtccttggtaactac
tatttaactatggaagaacccggacaaataggtgaaggaatgattttccgtgacttagac
gaagttgttttagcatggagaaatggttgtgtccacttacatactcgtattggtttacaa
acaagctcaatgcctgaaaaaccatttacagaatggcaacgtgaacgtattttaacaaca
actgttggtaaagcaatctttaatgaaattatgccaccagaattcccttacttaaatgaa
ccaactgattataacttgactgttcaaacacctgataaatactttgttgaagccggagca
gacattcctgcattcatcaaagaacaaccagaagttggaccattcaagaagaaaaatctt
ggtaatattatcgctgaagtcttcaaacgtttcaaaattactgaaacatctaaaatgtta
gatagaatgaaagacttaggctacaaacattctacttatgcaggtatgactgtagggatt
gccgatatcgttgtgttacatgaaaaacaagcaatgattgaagaagcacataatcaagta
gaaaaagtaacaaaacaattccgtcgtggtttaattacagatgacgagcgttatgaacga
gtaattggtatttggaacgcgacaaaagatgctattcaagcaaaattaatggaaagttta
gatgcacgtaacccaatcttcatgatgagtgattctggagcccgtggtaatatctccaac
tttactcagttagccggtatgcgtggattgatggctgctcctaatggtcgtatcatggag
ttacctatcgtatctaacttccgtgaaggattaaccgtcttagaaatgtttatctcgact
catggtgctcgtaaaggtatgaccgatacagcccttaagacagccgattcaggttactta
actcgtcgtttagttgacgtggctcaagatgttattattcgtgaaactgactgtggaact
gaccgtggtttagatatttcagtgatgaaagaaggaaatgaaatcattgaaacactagaa
gagcgtatgttaggtcgttacacacgtaaatcagtaattcatcctgagactaaagaagta
attgttggcgctaatgaaatcattacagaagatattgcaaaacaaattgttgatgcaggt
attgaacaaattacgattcgttcagtcttcacatgtaatacaaaacatggcgtatgtaaa
cattgctatggtcgtaacttagcgactggttctgaagttgaagttggagaagcagttggt
acaattgcagcccaatcaattggtgaacctggtactcagttaaccatgcgtacattccat
acgggtggggttgccggagacgatattactcaaggtttacctcgtatccaagagattttt
gaagctcgtaatcctaaaggacaagctgttatttctgaagtagctggtgaagttattgaa
attacagaagaccaagcagatcgtacaaaagaagtggttgttaaaggtcaaacagataca
agatcttactctgttccttacacttctcgtatgaaagttgctgaaggtgatattattgac
cgtggtactccattaacagaaggatcaattgatccaaaacaattattaacagtaaaagat
gtattagctgttgaaaactatctacttaaagaagtacaaaaagtttaccgtatgcaaggg
gtagaaatcggagataaacacgttgaggttatggttcgtcaaatgctacgtaaagtaaga
gttatggatccaggtgattctgatatcttaccaggtacactagttgatattagtgaattt
aaagaccgtaactacaatacacttgtttctggtggaacacctgcaactggacgtccagtc
ttgttaggtatcactaaagcctcacttgaaacaaacagtttcttatctgctgcatcattc
caggaaacaactcgtgtgttaactgatgctgcaattagaggtaaaaaagaccacttactt
ggattgaaagaaaatgttatcattggtaaaatcattccagctggtactggtatggcgaaa
taccgtaacatggaaccaaaagaagtgggtgtagcaagtgaaaatgtgtatagtatcagt
gatattgaagcacaaatggctgctgcagaagcgttaaaaaatcaagaataa
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