Vibrio lentus: ISX51_04405
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Entry
ISX51_04405 CDS
T09020
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vle
Vibrio lentus
Pathway
vle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ISX51_04405 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vle03019
]
ISX51_04405 (pnp)
03016 Transfer RNA biogenesis [BR:
vle03016
]
ISX51_04405 (pnp)
Enzymes [BR:
vle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ISX51_04405 (pnp)
Messenger RNA biogenesis [BR:
vle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ISX51_04405 (pnp)
Transfer RNA biogenesis [BR:
vle03016
]
Prokaryotic type
tRNA degradation factors
ISX51_04405 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_RRP5_4th
S1_RRP5
OB_PDCD11
KH_2
KH_SLS1_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
WGS61494
LinkDB
All DBs
Position
ED252-c1:897003..899123
Genome browser
AA seq
706 aa
AA seq
DB search
MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS
INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV
SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN
TELKAKVAEQAETRLSDAYQITEKMARYEQVGAIKNDTVEALIAQDENLDEREIRGMLGS
LEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ
RDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA
TEGAAAKEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADKRV
EKVSDYLTEGQEVPVKVLEIDRQGRVRLSMKEAVETPAEGEAPAAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaaaaccagttgtaaaatcgttccagtacggtaaccacaccgttactctagaa
acgggcgtaatggcacgtcaagctactgctgctgtaatggcgactatggacgatacatca
gtattcgtttctgttgttgctaagaaagaagctgttgcaggccaagatttcttccctcta
acagttaactaccaagagcgtacatacgctgcgggtaaaatccctggtggtttcttcaag
cgtgaaggtcgtccttctgaaggcgaaacgctaacagctcgtctgattgaccgtccaatt
cgtccacttttcccaagtgcgtttaaaaacgaagttcaagttatcgctacggttgtttct
atcaaccctgacgtaaacccagacatgatcactatgatcgcaacgtctgctgcgcttgct
atctctggtgctccattcaatggccctatcggtgctgcacgtgttggtcacatcgacggc
gaacttgttcttaacccatcaaatactgagcttgaaaactctaaactagacctagttgtg
tctggtacagaaggcgcagtactaatggttgaatctgaagcagataacctatctgaagaa
gaaatgctttcagctgttgtttacggtcacgaccaacaacaagttgtaatcaaagcgatc
aacgaatttgcagctgaagttgcaactccatcttggaactgggaagcgccagcagttaac
actgagcttaaagctaaagttgctgagcaagctgaaactcgtctatctgacgcgtaccag
atcactgagaaaatggctcgttacgagcaagttggcgcaatcaagaacgacactgttgaa
gctctaattgcacaagacgaaaacctagatgagcgcgaaatccgcggcatgcttggttct
ctagagaaaaacgtagtacgtagccgcatcattgctggcaacccacgtatcgatggccgt
gaaaaagacatggttcgtgcgctagacgtacgtactggtgttcttccacgtacacacggt
tcttctctattcactcgtggtgaaactcaagcacttgttactgcaacgcttggtacacaa
cgtgatgcacaaatcatcgacagcctaatgggtgagaagaaagacaacttccttctacac
tacaacttccctccatactgtgtaggtgagactggtttcgttggttctcctaagcgtcgt
gaaattggtcacggtaagcttgctaaacgtggtatccaagcagtaatgccttctgttgac
gaattcccatacacagttcgtgttgtatcggaaatcacagaatctaacggttcttcttca
atggcttctgtatgtggtacatctctagcacttatggatgctggtgttccaatcaaagct
tctgttgcgggtatcgcaatgggtcttgttaaagaaggcgacgatttcgttgttctttct
gacatccttggcgatgaagatcacctaggtgacatggactttaaagtagcaggtactaac
gctggtatcactgcacttcaaatggacatcaagatcgaaggtatcactaaagagatcatg
caaattgcacttaaccaagcgcaaggtgcacgtaagcacatcctttctgtaatggatgaa
gctatctctggtgctcgtgaagatatctctgaattcgctccacgtatccacacaatgaaa
atcagctctgataagatcaaagatgttatcggtaaaggcggcgcagttatccgtgctctt
tgtgaagaaacgggtactacaatcgaaatcgaagacgatggcacaattaagattgctgct
actgaaggcgcagctgctaaagaagctatccgccgtatcgaagagatcactgctgaagtt
gaagttggccgcatttaccaaggtaaagttgctcgtctagctgacttcggtgcattcgtt
actatccttccaggtaaagatggtctagtacacatctctcaaatcgctgacaagcgtgtt
gagaaagtgtctgactacctaactgaaggtcaagaagttcctgttaaggttcttgaaatt
gaccgtcaaggccgtgtacgtctaagcatgaaagaagcagttgaaacgccagctgaaggc
gaagcacctgctgctgagtaa
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